Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13479206|gb|BG508549.1|BG508549EST: AAATGGAGGAAATACGGGAAGAAAACAGTGAAGAGCAGTCCCAACCCACG GAACTACTACAAGTGTTCAGGTGAAGGATGCGATGTGAAGAAAAGG
genomic: AAATGGAGGAAATACGGGAAGAAAACAGTGAAGAGCAGTCCCAACCCACGgtaataataa ... gatgatgcagGAACTACTACAAGTGTTCAGGTGAAGGATGCGATGTGAAGAAAAGG
EST:
gi|120492155|gb|EH220322.1|EH220322EST: AAATGGAGGAAATACGGGAAGAAAACAGTGAAGAGCAGTCCCAACCCACG GAACTACTACAAGTGTTCAGGTGAAGGATGCGATGTGAAGAACAGGGTGGA
genomic: AAATGGAGGAAATACGGGAAGAAAACAGTGAAGAGCAGTCCCAACCCACGgtaataataa ... gatgatgcagGAACTACTACAAGTGTTCAGGTGAAGGATGCGATGTGAAGAAAAGGGTGGA
EST:
gi|120492275|gb|EH220442.1|EH220442EST: AAATGGAGGAAATACGGGAAGAAAACAGTGAAGAGCAGTCCCAACCCACG GAACTACTACAAGTGTTCAGGTGAAGGATGCGATGTGAAGAAAAGGGTGGA
genomic: AAATGGAGGAAATACGGGAAGAAAACAGTGAAGAGCAGTCCCAACCCACGgtaataataa ... gatgatgcagGAACTACTACAAGTGTTCAGGTGAAGGATGCGATGTGAAGAAAAGGGTGGA
EST:
gi|120492465|gb|EH220632.1|EH220632EST: AAATGGAGGAAATACGGGAAGAAAACAGTGAAGAGCAGTCCCAACCCACG GAACTACTACAAGTGTTCAGGTGAAGGATGCGATGTGAAGAAAAGGGTGGA
genomic: AAATGGAGGAAATACGGGAAGAAAACAGTGAAGAGCAGTCCCAACCCACGgtaataataa ... gatgatgcagGAACTACTACAAGTGTTCAGGTGAAGGATGCGATGTGAAGAAAAGGGTGGA
EST:
gi|23052671|gb|BU577163.1|BU577163EST: AAATGGAGGAAATACGGGAAGAAAACAGTGAAGAGCAGTCCCAACCCACG GAACTACTACAAGTGTTCAGGTGAAGGATGCGATGTGAAGAAAAGGGTGGA
genomic: AAATGGAGGAAATACGGGAAGAAAACAGTGAAGAGCAGTCCCAACCCACGgtaataataa ... gatgatgcagGAACTACTACAAGTGTTCAGGTGAAGGATGCGATGTGAAGAAAAGGGTGGA
EST:
gi|120492087|gb|EH220254.1|EH220254EST: AAATGGAGGAAATACGGGAAGAAAACAGTGAAGAGCAGTCCCAACCCACG GAACTACTACAAGTGTTCAGGTGAAGGATGCGATGTGAAGAAAAGGGTGGA
genomic: AAATGGAGGAAATACGGGAAGAAAACAGTGAAGAGCAGTCCCAACCCACGgtaataataa ... gatgatgcagGAACTACTACAAGTGTTCAGGTGAAGGATGCGATGTGAAGAAAAGGGTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGATAACGTTTAGAACCAGATCGCAACTTGAGGTTATGGATGATGGATATAAATGGAGGAAATACGGGAAGAAAACAGTGAAGAGCAGTCCCAACCCACGgtaataataaatatattctctataatctatatatatctcattaattatcttctttttaaataataatgcacattttttatatcaaaaatgttttttatta
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG