Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAAACCGAAGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAGgtcctcccatgttcctttttgtaccgttattgatttcataatcacaatgttttctgtttggtatgccttttgttatgttaatgtttatattgattaatgg...

Basic information

species Glycine max
transcript GLYMA06G14260.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408608|gb|EV278416.1|EV278416
EST:     AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAG                         GTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
genomic: AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAGgtcctcccat ... taagatgcagGTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
EST: gi|7924488|gb|AW830514.1|AW830514
EST:     AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAG                         GTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
genomic: AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAGgtcctcccat ... taagatgcagGTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
EST: gi|151396271|gb|EV266148.1|EV266148
EST:     AGACGAGGATGAGGACGATGACGACGATGACAAGGAGGATGACACCCAAG                         GTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
genomic: AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAGgtcctcccat ... taagatgcagGTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
EST: gi|298174693|gb|HO014724.1|HO014724
EST:     AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAG                         GTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
genomic: AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAGgtcctcccat ... taagatgcagGTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
EST: gi|298198631|gb|HO040170.1|HO040170
EST:     AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAG                         GTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
genomic: AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAGgtcctcccat ... taagatgcagGTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
EST: gi|193608297|gb|FK555278.1|FK555278
EST:     AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAG                         GTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
genomic: AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAGgtcctcccat ... taagatgcagGTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
EST: gi|17401291|gb|BM178073.1|BM178073
EST:     AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAG                         GTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
genomic: AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAGgtcctcccat ... taagatgcagGTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
EST: gi|298184967|gb|HO030180.1|HO030180
EST:     AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAG                         GTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
genomic: AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAGgtcctcccat ... taagatgcagGTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
EST: gi|33388223|gb|CA851430.1|CA851430
EST:     AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAG                         GTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
genomic: AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAGgtcctcccat ... taagatgcagGTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
EST: gi|26043669|gb|CA782121.1|CA782121
EST:     AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAG                         GTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
genomic: AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAGgtcctcccat ... taagatgcagGTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
EST: gi|192334785|gb|FK025276.1|FK025276
EST:     AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAG                         GTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
genomic: AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAGgtcctcccat ... taagatgcagGTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
EST: gi|192293893|gb|FG986102.1|FG986102
EST:     AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAG                         GTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
genomic: AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAGgtcctcccat ... taagatgcagGTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
EST: gi|15201639|gb|BI424979.1|BI424979
EST:     AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAG                         GTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
genomic: AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAGgtcctcccat ... taagatgcagGTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
EST: gi|298192560|gb|HO036642.1|HO036642
EST:     AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAG                         GTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
genomic: AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAGgtcctcccat ... taagatgcagGTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
EST: gi|33389448|gb|CA852655.1|CA852655
EST:     AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAG                         GTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
genomic: AGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAGgtcctcccat ... taagatgcagGTGGTGCTGAGGGTGGGAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACGCTCCCATTGTCGAGGACGTCAAGGACGATGACAAAGAGGAAACCGAAGACGAGGATGAGGACGATGACGACGATGACAAGGAAGATGACGCCCAAGgtcctcccatgttcctttttgtaccgttattgatttcataatcacaatgttttctgtttggtatgccttttgttatgttaatgtttatattgattaatgg

- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG