Sequence
atgc intronic sequence ATGC exonic sequenceGAGGGAGAGGTTGAGGGAGCGTGGTTTAGGTGTGACACGGTATGAATGGGTGAAGACAAGCTCAAAAAGGAAAGCAGTCATGGTGCCATTGCCTGCTGGGgtttgttccctttatcatgcaattgattaaaatgttgtcttgtgttctattcagaggagaaaagtggcaatagtttttaaatatatatgttacagtttag...
Basic information
species | Glycine max |
transcript | GLYMA06G13410.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G13410.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G24260.1 (Arabidopsis thaliana), 5'ss of exon 2
GAGGGAGAGGTTGAGGGAGCGTGGTTTAGGTGTGACACGGTATGAATGGGTGAAGACAAGCTCAAAAAGGAAAGCAGTCATGGTGCCATTGCCTGCTGGGgtttgttccctttatcatgcaattgattaa--aatgttgtcttgtgttctattcagaggagaaaagtggcaatagtttttaaatatatatgttacagtttag-
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GAGGGAGAGGTTGCGGGAGCGTGGTTTAGGTGTAACTCGGTATGAATGGGTCAAGACTAACTCAAAGATGAGATTCATTGTGGTTCCTTTACCTGCCGGGgtatgttctgttttttccttgcttctataatcgacactatgttcttcgttagtttcttgaaacctgtggaaattttactggaat---tgtgttactttttaga
upper sequence: GLYMA06G13410.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0098g01880.t01 (Vitis vinifera), 5'ss of exon 2
GAGGGAGAGGTTGAGGGAGCGTGGTTTAGGTGTGACACGGTATGAATGGGTGAAGACAAGCTCAAAAAGGAAAGCAGTCATGGTGCCATTGCCTGCTGGGgtttgttccctttatcatgcaattgattaaaatgttgtcttgtgttctattcagaggagaaaagtggcaatagtttttaaatatatatgttacagtttag--
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GAGGGAGAGATCGAGGGAGCGTGGGTTGGGAGTGACAAGATACGAATGGGTGAAGACGAGCTTGAAGAAGAGAATGATCATGGTGCCTTTGCCTGTCGGGgtttgttcctaaatctctagtattaattgttgt-ttgtattgttttgt-ttctcaagtgtattgaaatttcctacttcgaatatcaaaatgccctcctattgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37995373|gb|CF806962.1|CF806962EST: GACAAGCTCAAAAAGGAAAGCAGTCATGGTGCCATTGCCTGCTGGG GTTTATATCCAGGACATTCCCCATTCAAAAGCAGAGCTCAAGCTTCCAAGT
genomic: GACAAGCTCAAAAAGGAAAGCAGTCATGGTGCCATTGCCTGCTGGGgtttgttccc ... ctatgaacagGTTTATATCCAGGACATTCCCCATTCAAAAGCAGAGCTCAAGCTTCCAAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGGGAGAGGTTGAGGGAGCGTGGTTTAGGTGTGACACGGTATGAATGGGTGAAGACAAGCTCAAAAAGGAAAGCAGTCATGGTGCCATTGCCTGCTGGGgtttgttccctttatcatgcaattgattaaaatgttgtcttgtgttctattcagaggagaaaagtggcaatagtttttaaatatatatgttacagtttag
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggagaaaa