1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGGACGTATCGCAGGCCGGATGAGAAGTCTGGAGGACATGGTGTTGGATGGAGTCCTATTATTCCATACAGCTTCAGAGTGCCCAAAGAATGGGAAGAGgtgatgcttaatgatctcttatagttaaagttggaaaaagtgttttaagtatacagtggaaaagaccaatgaaataactcctatttctgtcgttttgggt...
species | Glycine max |
transcript | GLYMA06G12760.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TATTATTCCATACAGCTTCAGAGTGCCCAAAGAATGGGAAGAG GTACCAGTATCAATAGCAGATCTTGGTGGCACAGAGATAGANNNGAGATTTEST: gi|120529314|gb|EH257448.1|EH257448
genomic: TATTATTCCATACAGCTTCAGAGTGCCCAAAGAATGGGAAGAGgtgatgctta ... tgcttaacagGTACCAGTATCAATAGCAGATCTTGGTGGCACAGAGATAGATTTGAGATTT
EST: GGAGTCCTATTATTCCATACAGCTTCAGAGTGCCCAAAGAATGGGAAGAG GTACCAGTATCAATAGCAGATCTTGGTGGCACAGAGATAGATTTGAGATTTEST: gi|213593009|gb|DB969863.1|DB969863
genomic: GGAGTCCTATTATTCCATACAGCTTCAGAGTGCCCAAAGAATGGGAAGAGgtgatgctta ... tgcttaacagGTACCAGTATCAATAGCAGATCTTGGTGGCACAGAGATAGATTTGAGATTT
EST: GGAGTCCTATTATTCCATACAGCTTCAGAGTGCCCAAAGAATGGGAAGAG GTACCAGTATCAATAGCAGATCTTGGTGGCACAGAGATAGATTTGAGATTT
genomic: GGAGTCCTATTATTCCATACAGCTTCAGAGTGCCCAAAGAATGGGAAGAGgtgatgctta ... tgcttaacagGTACCAGTATCAATAGCAGATCTTGGTGGCACAGAGATAGATTTGAGATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGACGTATCGCAGGCCGGATGAGAAGTCTGGAGGACATGGTGTTGGATGGAGTCCTATTATTCCATACAGCTTCAGAGTGCCCAAAGAATGGGAAGAGgtgatgcttaatgatctcttatagttaaagttggaaaaagtgttttaagtatacagtggaaaagaccaatgaaataactcctatttctgtcgttttgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaga