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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCAGCTGCTTGTGCTGAGAGAGCAACTAGTGATATGCTCATTGGTCCAGACTGGGCAATCAACATAGACTTGTGTGATATCATTAATATGGACCCTGGgtattgttctcgtctctcgctttgtttctcttaatcactaatcgctgcggaaatctctagcgctttgcttggagagtcagtggtctgctgtatgaataca...

Basic information

species Glycine max
transcript GLYMA06G12570.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G12570.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G21380.1 (Arabidopsis thaliana), 5'ss of exon 2
ACGCAGCTGCTTGTGCTGAGAGAGCAACTAGTGATATGCTCATTGGTCCAGACTGGGCAATCAACATAGACTTGTGTGATATCATTAATATGGACCCTGGgta--ttgttctcgtctctcgctttgtttctcttaatcactaatcgctgcggaaatctctagcgctt--tgcttggagagtcagtggtctgctgtatgaataca
| || ||||||||||||||||| || || |  |||||||| || |||||||| ||||| |||||||| ||  ||||||| || || || ||||| ||  ||||  | ||| |  |  ||   |     |||  | ||   | || |  |   |       |||      |||||  ||  |      | |  ||| |   ||  
ATGCGGCTGCTTGTGCTGAGAGGGCTACAAACGATATGCTGATCGGTCCAGATTGGGCTATCAACATTGAACTGTGTGACATTATCAACATGGAACCAAGgtaagtcgttttaatgacta--tagagatctactgatatttgattga-gtctaggctaggagcctaggatgcttaaagttttgaccttgttttgtttctctag-

upper sequence: GLYMA06G12570.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G76970.1 (Arabidopsis thaliana), 5'ss of exon 2
ACGCAGCTGCTTGTGCTGAGAGAGCAACTAGTGATATGCTCATTGGTCCAGACTGGGCAATCAACATAGACTTGTGTGATATCATTAATATGGACCCTGGgtatt-gttctcgt----ctctcgctttgtttctcttaatcactaatcgctgcggaaatctctagcgctttgcttg-gagagtcagtggtctgctgtatgaataca
| || ||||| ||||| || || || || | ||||||||| ||||||||||| ||||| || ||||| || ||||||||| | || || ||||| ||| |||||| ||  ||      |||||   | | ||  || | |    | |       |        |  | || | ||| ||  ||  | |  ||   |          
ATGCGGCTGCATGTGCAGAAAGGGCTACAAATGATATGCTGATTGGTCCAGATTGGGCTATTAACATTGAATTGTGTGATCTTATCAACATGGATCCTAGgtatttgtaatcagaaaactctcagatcgctttgct-agttttcagttttctttgtggctgggaatgattagtttgagattgtttgagtcctttag----------

upper sequence: GLYMA06G12570.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0001g01180.t01 (Vitis vinifera), 5'ss of exon 1
ACGCAGCTGCTTGTGCTGAGAGAGCAACTAGTGATATGCTCATTGGTCCAGACTGGGCAATCAACATAGACTTGTGTGATATCATTAATATGGACCCTGGgtattgttctcgtctctcgctttgtttctcttaatcactaatcgctgcggaaatctctagcgctttgcttggagagtc----agtggtctgctgtatgaataca
| ||||| || |||| ||| || ||||| ||||||||| | |||||||||||||||||||| ||||| ||  | |||||||||||||| ||||| |||||||||  | ||  |   |  |    | | | ||| | | | ||   |    | |   |  |     |  ||||  | ||    |    |  | | | | | ||  
ATGCAGCAGCATGTGTTGAAAGGGCAACGAGTGATATGTTGATTGGTCCAGACTGGGCAATAAACATCGAGCTATGTGATATCATTAACATGGATCCTGGgtatcatacttttgctttaccagctattttttatttatttattttt--aaatagtgcgggttaaatagttgggaattcctttaaatattagttttgttagta--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296865|gb|FG991906.1|FG991906
EST:     GACTGGGCAATCAACATAGACTTGTGTGATATCATTAATATGGACCCTGG                         GCAAGCCAAGGATGCTTTGAAGATACTCAAGAAGCGTTTGGGCAGTAAAAA
genomic: GACTGGGCAATCAACATAGACTTGTGTGATATCATTAATATGGACCCTGGgtattgttct ... aaattttcagGCAAGCCAAGGATGCTTTGAAGATACTCAAGAAGCGTTTGGGCAGTAAAAA