Sequence
atgc intronic sequence ATGC exonic sequenceACCTCCTGCTATATCTATGGCTGCATTGGGGGATAAAATTGGTTCATCATTGATTGCTCAAGCAGCGGAAGTGCCTACCCTTCCATGGAGTGGTTCTCATgtaaatttccatctcccattttagtgcctttcttttttaagggataccagctcatgacgttgaagtttcttcttacag
Basic information
species | Glycine max |
transcript | GLYMA06G11120.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G377341_T02 (Zea mays), 5'ss of exon 2
ACCTCCTGCTATATCTATGGCTGCATTGGGGGATAAAATTGGTTCATCATTGATTGCTCAAGCAGCGGAAGTGCCTACCCTTCCATGGAGTGGTTCTCATgtaaatttccatctcccattttagtgcctttcttttttaagggataccagct--catgacgttgaagtttcttcttacag------------
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ACCACCATCAGCTGCAATGGCTGCACTGGGTGATAAGATTGGTTCTTCTCTTATTGCACAAGCAGCTGGAGTTCCAACTCTTCCATGGAGTGGATCACATgta---tgccatctcctatttctgtgtggttttgctcctatttctctctgctactttactgttcacttaacattatatcaaactctctgcag
upper sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G36180.1 (Arabidopsis thaliana), 5'ss of exon 3
ACCTCCTGCTATATCTATGGCTGCATTGGGGGATAAAATTGGTTCATCATTGATTGCTCAAGCAGCGGAAGTGCCTACCCTTCCATGGAGTGGTTCTCATgtaaatttccatctcccatttta-gtgcctttcttttttaagggatacca-gctcatgacgttgaagtttcttcttacag
|||||||| || ||| ||||| |||||||| |||||||| || |||||||||||||| || || || ||||| ||||||||||||||||| ||||||||| | | |||| ||| | | || | | || | |||| | | ||| | || |||
TCCTCCTGCAGATTCAATGATAGCATTAGGGGATAAGATTGGTTCGTCGTTGATTGCTCAAGCTGCTGATGTACCTACTCTTCCATGGAGTGGTTCCCATgtaaatgaagctgaacttgtttacatgcatagaagtgttgatctgtttcatagtgatgatgattgtttttgctttttcag
upper sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G36160.2 (Arabidopsis thaliana), 5'ss of exon 3
ACCTCCTGCTATATCTATGGCTGCATTGGGGGATAAAATTGGTTCATCATTGATTGCTCAAGCAGCGGAAGTGCCTACCCTTCCATGGAGTGGTTCTCATgtaaatttccatctcccattttag--tgcctttcttttttaagggataccagctcatgacgttgaagtttcttcttacag------
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TCCTCCAGCATCTTCAATGGCAGCACTGGGAGATAAGATTGGTTCTTCGTTGATTGCACAAGCTGCTGATGTACCCACTCTGCCATGGAGTGGTTCCCATgtaagtaaatttactcttgttaagcttagcttgtgtaccagaggtatatattttcatttttatatactgaattcctatgttttcag
upper sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0001g04980.t01 (Vitis vinifera), 5'ss of exon 3
ACCTCCTGCTATATCTATGGCTGCATTGGGGGATAAAATTGGTTCATCATTGATTGCTCAAGCAGCGGAAGTGCCTACCCTTCCATGGAGTGGTTCTCATgtaaatttccatctccca----ttttagtgcctttcttttttaagggat-----accagctcatgacgttgaagtttcttcttacag
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ACCCCCTGCAACATCTATGGGGGCACTTGGAGATAAGATTGGTTCATCATTGATTGCTCAAGCAGCAGATGTACCCACCCTTCCATGGAGTGGTTCACATgtaagatttttactcttacatattttcatattctttgttttgtagagattgtccactgtctaatatctttaaatttctatttcag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192305788|gb|FG995730.1|FG995730EST: TGATTGCTCAAGCAGCGGAAGTGCCTACCCTTCCATGGAGTGGTTCTCAT GTGAAAATTCCGCCTGAAAGTTCCTTGATTACTATTCCTGATGAAATTTAT
genomic: TGATTGCTCAAGCAGCGGAAGTGCCTACCCTTCCATGGAGTGGTTCTCATgtaaatttcc ... cttcttacagGTGAAAATTCCGCCTGAAAGTTCCTTGATTACTATTCCTGATGAAATTTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACCTCCTGCTATATCTATGGCTGCATTGGGGGATAAAATTGGTTCATCATTGATTGCTCAAGCAGCGGAAGTGCCTACCCTTCCATGGAGTGGTTCTCATgtaaatttccatctcccattttagtgcctttcttttttaagggataccagctcatgacgttgaagtttcttcttacag
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