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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAAGCCACACACTTCAACTGCAGATCTGCTTACGTGGCCTGAAACACCAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAGgtctagtgtagtctactgtttcttttctttttttggtttcttctttaggtgattttaaattttatttacctgttttttcttctttttttgctgatattgtggaatttcag

Basic information

species Glycine max
transcript GLYMA06G10930.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298181167|gb|HO022606.1|HO022606
EST:     CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAG                         CCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
genomic: CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAGgtctagtgta ... ggaatttcagCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
EST: gi|192314071|gb|FK010351.1|FK010351
EST:     CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAG                         CCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
genomic: CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAGgtctagtgta ... ggaatttcagCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
EST: gi|193341668|gb|FK305942.1|FK305942
EST:     CCTTCCTCCGCCGTTCGTTCTCACCAG                         CCGTCGGATGGGGTCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
genomic: CCTTCCTCCGCCGTTCGTTCTCACCAGgtctagtgta ... ggaatttcagCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
EST: gi|298178909|gb|HO024644.1|HO024644
EST:     CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAG                         CCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
genomic: CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAGgtctagtgta ... ggaatttcagCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
EST: gi|209714511|gb|BW684874.1|BW684874
EST:     CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAG                         CCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
genomic: CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAGgtctagtgta ... ggaatttcagCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
EST: gi|208271227|gb|GE066189.1|GE066189
EST:     CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAG                         CCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
genomic: CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAGgtctagtgta ... ggaatttcagCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
EST: gi|208149384|gb|GD948116.1|GD948116
EST:     ATCCTTCCTCCGCCGTTCGTTCTCACCAG                         CCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
genomic: ATCCTTCCTCCGCCGTTCGTTCTCACCAGgtctagtgta ... ggaatttcagCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
EST: gi|9204366|gb|BE330590.1|BE330590
EST:     CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAG                         CCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
genomic: CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAGgtctagtgta ... ggaatttcagCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
EST: gi|208156520|gb|GD956830.1|GD956830
EST:     CATCCTTCCTCCGCCGTTCGTTCTCACCAG                         CCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
genomic: CATCCTTCCTCCGCCGTTCGTTCTCACCAGgtctagtgta ... ggaatttcagCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
EST: gi|213589447|gb|DB973183.1|DB973183
EST:     CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAG                         CCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
genomic: CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAGgtctagtgta ... ggaatttcagCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
EST: gi|5605824|gb|AI899922.1|AI899922
EST:     CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAG                         CCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
genomic: CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAGgtctagtgta ... ggaatttcagCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
EST: gi|213593687|gb|DB971709.1|DB971709
EST:     CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAG                         CCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
genomic: CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAGgtctagtgta ... ggaatttcagCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
EST: gi|213607251|gb|DB967044.1|DB967044
EST:     CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAG                         CCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
genomic: CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAGgtctagtgta ... ggaatttcagCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
EST: gi|298191866|gb|HO035948.1|HO035948
EST:     CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAG                         CCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
genomic: CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAGgtctagtgta ... ggaatttcagCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
EST: gi|51345323|gb|CO986056.1|CO986056
EST:     CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAG                         CCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
genomic: CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAGgtctagtgta ... ggaatttcagCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
EST: gi|192329307|gb|FK020226.1|FK020226
EST:     CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAG                         CCGTCGGATGGGATCAGGAAGGTGGTATTT-GGGGTCAGGTCACCGATGAA
genomic: CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAGgtctagtgta ... ggaatttcagCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
EST: gi|209722915|gb|BW669461.1|BW669461
EST:     CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAG                         CCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA
genomic: CAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAGgtctagtgta ... ggaatttcagCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAA