1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGTTCGGGCACATGTAGAATTGATGTGGCTGCTAAGTTCCACAACACCAATTGGTTGGCTGAACAAAATGATACAATTTAAAGAGAAATCTCGCAAGGCGgtgcgttcatagctgtatgaattcctaatttctattttataaattatttattatttttctagttttatggatctaatttgatttcttaagttttattgta...
species | Glycine max |
transcript | GLYMA06G09240.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGTTGGCTGAACAAAATGATACAATTTAAAGAGAAATCTCGACAAAGGCG GGAGATGAAGAAGTTGGG-TTGCCCTTTTGAEST: gi|23052815|gb|BU577306.1|BU577306
genomic: GGTTGGCTGAACAAAATGATACAATTTAAAGAGAAATCTCG-CAA-GGCGgtgcgttcat ... ggatttgtagGGAGATGAAGAAGTTGGGGTTGCCCTTTTGA
EST: TTGGNTGGCTGAACAAAATGATACAATTTAAAGAGAAATCTCGCAAGGCG GGAGATGAATAAATTGGGGTTGCCCTTTTGACTTATCCTGNTCTGATGGCTEST: gi|23052769|gb|BU577260.1|BU577260
genomic: TTGGTTGGCTGAACAAAATGATACAATTTAAAGAGAAATCTCGCAAGGCGgtgcgttcat ... ggatttgtagGGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCT
EST: TTGGTTGGCTGAACAAAATGATACAATTTAAAGAGAAATCTCGCAAGGCG GGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTEST: gi|193361959|gb|FK325595.1|FK325595
genomic: TTGGTTGGCTGAACAAAATGATACAATTTAAAGAGAAATCTCGCAAGGCGgtgcgttcat ... ggatttgtagGGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCT
EST: TTGGTTGGCTGAACAAAATGATACAATTTAAAGAGAAATCTCGCAAGGCG GGAGATGAAGAAGTTGGG-TTGCCCTTTTGA
genomic: TTGGTTGGCTGAACAAAATGATACAATTTAAAGAGAAATCTCGCAAGGCGgtgcgttcat ... ggatttgtagGGAGATGAAGAAGTTGGGGTTGCCCTTTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTCGGGCACATGTAGAATTGATGTGGCTGCTAAGTTCCACAACACCAATTGGTTGGCTGAACAAAATGATACAATTTAAAGAGAAATCTCGCAAGGCGgtgcgttcatagctgtatgaattcctaatttctattttataaattatttattatttttctagttttatggatctaatttgatttcttaagttttattgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA