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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAACTGTCGCTTATAACAAAGATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtgatatttggttacacttttgtttgtttcttactagattatgttaattcataaatataatcggtagttaaatttaatttggtttctgaaaatg...

Basic information

species Glycine max
transcript GLYMA06G08670.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213618075|gb|DB963708.1|DB963708
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|27808994|gb|CB063416.1|CB063416
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|37997401|gb|CF808990.1|CF808990
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|151408997|gb|EV278805.1|EV278805
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|213587077|gb|DB961772.1|DB961772
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|4397049|gb|AI496046.1|AI496046
EST:     TCCAAGTCCAGTTAAGCTCAACTTNGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTT-GAATGTAGTGAGGCGAGTTGAACAGCA
genomic: TCCAAGTCCAGTTAAGCTCAACTT-GGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCA
EST: gi|151394218|gb|EV264089.1|EV264089
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|6454608|gb|AW185291.1|AW185291
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|9986765|gb|BE660873.1|BE660873
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|151395018|gb|EV264889.1|EV264889
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|298184704|gb|HO029917.1|HO029917
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|213588877|gb|DB967957.1|DB967957
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|192307206|gb|FK001220.1|FK001220
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|298196933|gb|HO041676.1|HO041676
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|209723439|gb|BW682393.1|BW682393
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|24205360|gb|BU964613.1|BU964613
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|298196196|gb|HO044587.1|HO044587
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|7925748|gb|AW831774.1|AW831774
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|209696907|gb|BW660472.1|BW660472
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|298174108|gb|HO017444.1|HO017444
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|209719273|gb|BW679815.1|BW679815
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|151411675|gb|EV281486.1|EV281486
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|209714938|gb|BW650784.1|BW650784
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: gi|18690845|gb|BM519693.1|BM519693
EST:     ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG                         GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTAACTGTCGCTTATAACAAAGATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtgatatttggttacacttttgtttgtttcttactagattatgttaattcataaatataatcggtagttaaatttaatttggtttctgaaaatg

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