Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATCGGTGACTGGCTGTGTTAGGGCTTTTGAATCCTCTTCTGCTAAACCCATGAGTTGGTGTGATAGCGTTCAGGAACCACGGATTCTCGTCGCACCCGgtaaaattacatttccttcataattttcaacattttcttttcttttttttccatataataaaattatagtcactttttagagaaaacatatgaacaggaa...

Basic information

species Glycine max
transcript GLYMA06G08230.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14259085|gb|BG881993.1|BG881993
EST:     CATGAGTTGGTGTGATAGCGTTCAGGAACCACGGATTCTCGTCGCACCCG                         ATCCTGGTACTGATGGAAATGGTCTGGGACAGATGATATCGCTCCGCCATC
genomic: CATGAGTTGGTGTGATAGCGTTCAGGAACCACGGATTCTCGTCGCACCCGgtaaaattac ... gcaagtgcagATCCTGGTACTGATGGAAATGGTCTGGGACAGATGATATCGCTCCGCCATC
EST: gi|8283180|gb|BE020741.1|BE020741
EST:     CATGAGTTGGTGTGATAGCGTTCAGGAACCACGGATTCTCGTCGCACCCG                         ATCCTGGTACTGATGGAAATGGTCTGGGACAGATGATATCGCTCCGCCATC
genomic: CATGAGTTGGTGTGATAGCGTTCAGGAACCACGGATTCTCGTCGCACCCGgtaaaattac ... gcaagtgcagATCCTGGTACTGATGGAAATGGTCTGGGACAGATGATATCGCTCCGCCATC
EST: gi|151395314|gb|EV265185.1|EV265185
EST:     CATGAGTTGGTGTGATAGCGTTCAGGAACCACGGATTCTCGTCGCACCCG                         ATCCTGGTACTGATGGAAATGGTCTGGGACAGATGATATCGCTCCGCCATC
genomic: CATGAGTTGGTGTGATAGCGTTCAGGAACCACGGATTCTCGTCGCACCCGgtaaaattac ... gcaagtgcagATCCTGGTACTGATGGAAATGGTCTGGGACAGATGATATCGCTCCGCCATC
EST: gi|192305677|gb|FG994359.1|FG994359
EST:     CATGAGTTGGTGTGATAGCGTTCAGGAACCACGGATTCTCGTCGCACCCG                         ATCCTGGTACTGATGGAAATGGTCTGGGACAGATGATATCGCTCCGCCATC
genomic: CATGAGTTGGTGTGATAGCGTTCAGGAACCACGGATTCTCGTCGCACCCGgtaaaattac ... gcaagtgcagATCCTGGTACTGATGGAAATGGTCTGGGACAGATGATATCGCTCCGCCATC