Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCAGTATGATAGCACTGCAACTGATTATTCGTCCAAGGAAGAAATCAAGGAAGGATCAAACGATAATATATATATGAACAATGTCACCATTTCTAAGgtgagaggatattttttccttgaattggtttaattaacttattaatattattcaaatcgagtatctcttctcatgtattttctcaattctag

Basic information

species Glycine max
transcript GLYMA06G07190.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213600837|gb|DB956229.1|DB956229
EST:     AGGAAGGATCAAACGATAATATATATATGAACAATGTCACCATTTCTAAG                         GAAGAGGAAGCAGAAATCATAGATCGGACAGAGCAATTAAAAGTAGGAAAA
genomic: AGGAAGGATCAAACGATAATATATATATGAACAATGTCACCATTTCTAAGgtgagaggat ... tcaattctagGAAGAGGAAGCAGAAATCATAGATCGGACAGAGCAATTAAAAGTAGGAAAA
EST: gi|209704026|gb|BW673626.1|BW673626
EST:     AGGAAGGATCAAACGATAATATATATATGAACAATGTCACCATTTCTAAG                         GAAGAGGAAGCAGAAATCATAGATCGGACAGAGCAATTAAAAGTAGGAAAA
genomic: AGGAAGGATCAAACGATAATATATATATGAACAATGTCACCATTTCTAAGgtgagaggat ... tcaattctagGAAGAGGAAGCAGAAATCATAGATCGGACAGAGCAATTAAAAGTAGGAAAA
EST: gi|192317170|gb|FK007895.1|FK007895
EST:     AGGAAGGATCGAACGATAATATATATATGAACAATGTCACCATTTCTAAG                         GAAGAGGAAGCAGAAATCATAGATCGGACAGAGCAATTAAAAGTAGGAAAA
genomic: AGGAAGGATCAAACGATAATATATATATGAACAATGTCACCATTTCTAAGgtgagaggat ... tcaattctagGAAGAGGAAGCAGAAATCATAGATCGGACAGAGCAATTAAAAGTAGGAAAA
EST: gi|213593270|gb|DB966095.1|DB966095
EST:     AGGAAGGATCAAACGATAATATATATATGAACAATGTCACCATTTCTAAG                         GAAGAGGAAGCAGAAATCATAGATCGGACAGAGCAATTAAAAGTAGGAAAA
genomic: AGGAAGGATCAAACGATAATATATATATGAACAATGTCACCATTTCTAAGgtgagaggat ... tcaattctagGAAGAGGAAGCAGAAATCATAGATCGGACAGAGCAATTAAAAGTAGGAAAA
EST: gi|192317169|gb|FK007894.1|FK007894
EST:     AGGAAGGATCGAACGATAATATATATATGAACAATGTCACCATTTCTAAG                         GAAGAGGAAGCAGAAATCATAGATCGGACAGAGCAATTAAAAGTAGGAAAA
genomic: AGGAAGGATCAAACGATAATATATATATGAACAATGTCACCATTTCTAAGgtgagaggat ... tcaattctagGAAGAGGAAGCAGAAATCATAGATCGGACAGAGCAATTAAAAGTAGGAAAA
EST: gi|7232481|gb|AW567836.1|AW567836
EST:     AGGAAGGATCAAACGATAATATATATATGAACAATGTCACCATTTCTAAG                         GAAGAGGAAGCAGAAATCATAGATCGGACAGAGCAATTAAAAGTAGGAAAA
genomic: AGGAAGGATCAAACGATAATATATATATGAACAATGTCACCATTTCTAAGgtgagaggat ... tcaattctagGAAGAGGAAGCAGAAATCATAGATCGGACAGAGCAATTAAAAGTAGGAAAA
EST: gi|209723656|gb|BW682761.1|BW682761
EST:     AGGAAGGATCAAACGATAATATATATATGAACAATGTCACCATTTCTAAG                         GAAGAGGAAGCAGAAATCATAGATCGGACAGAGCAATTAAAAGTAGGAAAA
genomic: AGGAAGGATCAAACGATAATATATATATGAACAATGTCACCATTTCTAAGgtgagaggat ... tcaattctagGAAGAGGAAGCAGAAATCATAGATCGGACAGAGCAATTAAAAGTAGGAAAA