Sequence
atgc intronic sequence ATGC exonic sequenceTGGAGACAATAGTTCTTGGTTTCCAGCATTACATTTTGGCCTTAGGAACTGCAGTCATGATTCCTTCATTTCTTGTGCCTTTGATGGGTGGAAGTGATgtaagtcattccctccaacttcaactccttttgctttgcttcatttttttatattattatttcttttattggtaaatgttagtttggattaaaaatgtta...
Basic information
species | Glycine max |
transcript | GLYMA06G06840.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G06840.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G34190.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGAGACAATAGTTCTTGGTTTCCAGCATTACATTTTGGCCTTAGGAACTGCAGTCATGATTCCTTCATTTCTTGTGCCTTTGATGGGTGGAAGTGATgtaag--tcattccctccaacttcaactccttttgctttgcttcatttttttatattattatttcttttattggtaaatgtta-gtttggattaaaaatgtta------
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GAGAAGCTATAGCTTTAGGTTTCGAGCATTACATTCTGGCTTTAGGAACTGCAGTGATGATACCTTCAATTCTTGTTCCTATGATGGGTGGAGATGATgtgagcattatttcttacattcttcactgtttcttaatccaacgaatctctgttgtgaattttgcttgtctgactgagattaatgttcctcccaaaaacaattgagtag
upper sequence: GLYMA06G06840.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv10s0003g01460.t01 (Vitis vinifera), 5'ss of exon 2
TGGAGACAATAGTTCTTGGTTTCCAGCATTACATTTTGGCCTTAGGAACTGCAGTCATGATTCCTTCATTTCTTGTGCCTTTGATGGGTGGAAGTGATgtaagtcattccctccaacttcaactccttttgctttgcttcatttttttatattattatttcttttattggtaaatgttagtttggattaaa-aatgtta---
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CGGAGGCTATAGCTCTGGGGTTCCAACACTACATCTTGGCCTTGGGGACTGCAGTGATGATTCCCTCATTCCTTGTTCCTCTGATGGGTGGAACTGATgtgagccaattc-tcaaaacccaa-tcatttttctttg--tgatttggttctattaccattcaatctaccaaagccattttctttaaattccatgaagtttttgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192305588|gb|FG994326.1|FG994326EST: CTGCAGTCATGATTCCTTCATTTCTTGTGCCTTTGATGGGTGGAAGTGAT GATGATAAAGTGAGGGTGGTGCAGACGCTGCTTTTTGTTGAAGGAATTAAT
genomic: CTGCAGTCATGATTCCTTCATTTCTTGTGCCTTTGATGGGTGGAAGTGATgtaagtcatt ... gatgattcagGATGATAAAGTGAGGGTGGTGCAGACGCTGCTTTTTGTTGAAGGAATTAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGAGACAATAGTTCTTGGTTTCCAGCATTACATTTTGGCCTTAGGAACTGCAGTCATGATTCCTTCATTTCTTGTGCCTTTGATGGGTGGAAGTGATgtaagtcattccctccaacttcaactccttttgctttgcttcatttttttatattattatttcttttattggtaaatgttagtttggattaaaaatgtta
- - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccctc