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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTGTTCCGGCGCCGAGGTCGCCCCCTACCCACCATCTTCATTGGCGGCAACCACGAAGCTTCCAATTATCTCTGGGAACTgtcagttcacactctgataactctttccatgcttttaaaatatttagggtttaggattttgggtctag

Basic information

species Glycine max
transcript GLYMA06G06360.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G06360.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g51540.1 (Oryza sativa), 5'ss of exon 3
-----------------TACTGTTCCGGCGCCGAGGTCGCCCCCTACCCACCA-TCTTCATTGGCGGCAACCACGAAGCTTCCAATTATCTCTGGGAACTgtcagt-----tcacactctgataactctttccatgcttttaaaatatttagggt-ttaggattttgggtctag--------------------------
                 ||||  || ||    |  || ||||| |||||| || ||||||| || || ||||||||||| ||||||||| | |||||||||| |||     ||| |      | |       | |||  |  ||| || | |  | |      | |||  ||||                          
TGAAATCATTTTGGAAGTACTACTCGGGACAAGCTGTTGCCCCATACCCAACAATCTTCATAGGTGGAAACCACGAAGCATCCAATTATTTGTGGGAACTgtgagtcttcttcatatatgcttgatggacctcttgcaatacaaaaatgtggtttctctttgctctggccctagggtatattcccatccacttgatgaca

upper sequence: GLYMA06G06360.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G461145_T01 (Zea mays), 5'ss of exon 4
-----------------TACTGTTCCGGCGCCGAGGTCGCCCCCTACCCA-CCATCTTCATTGGCGGCAACCACGAAGCTTCCAATTATCTCTGGGAACTgtcagt--tcacactctg-ataact------ctttccatgcttttaaaatattta-gggtttaggattttgggtctag----------------------
                 ||||  || || |  |  || || || |||||| ||||||| ||||| || ||||||||||| ||||||||||| |||||| ||| |||  |  || | |  |||| |       |  || | |   || | | || |    |     | ||   || |                        
TGAACACATTTTGGAAGTACTACTCAGGAGAAGCAGTTGCTCCGTACCCAACCATCTTTATTGGTGGAAACCACGAAGCATCCAATTATCTGTGGGAATTgtgagtgtttgcaatttctataatttgtggtttcccctttcccctagattgttaacatatcctcaagttcatgtttgtttacaaataactagaatctgtg