Sequence
atgc intronic sequence ATGC exonic sequenceGCTAGCTCTCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTGATGGTGAAGTCGTTGGCCTTTTCGGAGTTTTTGATGgtatatttttatcttcctctcttcttcatctcctggttgtacactgattggaaaatatgccaaaatattgtacgtagaactcatgctatgtgttcttctg...
Basic information
species | Glycine max |
transcript | GLYMA06G06310.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G06310.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g05630.1 (Oryza sativa), 5'ss of exon 2
GCTAGCTCTCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTGATGGTGAAGTCGTTGGCCTTTTCGGAGTTTTTGATGgtatatttttatcttcctctcttcttcatctcctggttgtacactgattggaaaatatgccaaaatattgtacgtagaactcatgctatgtgttcttctg-
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GCAAGTGCTCCTGGGAAAAGGGCTTCAATGGAGGATTTCTACGAGACGAGAATCGATGGTGTTGATGGAGAGACCATTGGATTATTTGGCGTATTCGACGgtactgtacagttccacgagaaatattattaattgtttgggttttggt--------atgtcaggacatccttgatc-aacttacttggt-tgtacatatag
upper sequence: GLYMA06G06310.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os06g48300.1 (Oryza sativa), 5'ss of exon 2
GCTAGCTCTCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTGATGGTGAAGTCGTTGGCCTTTTCGGAGTTTTTGATGgtatatttttatcttcctctcttcttcatctcctggttgtacactgattggaaaatatgcca-----------------aaatattgtacgtagaact-catgctatgtgttcttctg
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GCGAGCTCTCCTGGAAAAAGATCCTCCATGGAGGACTTCTATGACACCAGAATTGATGGTGTCGATGGAGAGACCGTTGGACTGTTTGGTGTCTTTGATGgtaa--tctgatgctttttcatgatgcaattagtgttt-tgtgttgacttaaataaatatcgtcacctgcttattcagtgattactgatcgtaatactacgtggtttgttttctgcag
upper sequence: GLYMA06G06310.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G056572_T02 (Zea mays), 5'ss of exon 2
GCTAGCTCTCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTGATGGTGAAGTCGTTGGCCTTTTCGGAGTTTTTGATGgtatatttttatcttcctctcttcttcatctcctggttgtaca--ctgattggaaaatatgccaaaatattgtacgta--gaactcatgctatgtg-ttcttctg-----
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GCAAGCTCCCCTGGTAAAAGGGCATCCATGGAAGACTTCTATGAGACAAAAATTGATTGTGTTGATGGTCAGATAGTTGGTCTTTTTGGAGTTTTTGATGgtacggatttctcttaagc----cagcatgatttagttatataatttgagcgcaactttcatctgtagccagttctttctgatcccatggcctatggtttgtttgtgtag
upper sequence: GLYMA06G06310.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 3
GCTAGCTCTCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTGATGGTGAAGTCGTTGGCCTTTTCGGAGTTTTTGATGgtatatttttatcttcctctcttcttcatctcctggttgtacactgat--tggaaaatatgccaaaatattgtacgtagaactcatgctatgtgttcttctg
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GCTAGTTCTCCCGGGAAAAGGTCTTCAATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTGAAGGAGAGATAGTTGGCCTTTTTGGAGTCTTTGATGgtac-tctttctttctctttctctctcttctacccatcccccaacaacactcaagcataggtaggtagattctgcatgcagtctttggtgtagcttgtatc-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192305900|gb|FG995786.1|FG995786EST: AATTGATGGTGTTGATGGTGAAGTCGTTGGCCTTTTCGGAGTTTTTGATG GTCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGAAAAACCTGTTTAGTA
genomic: AATTGATGGTGTTGATGGTGAAGTCGTTGGCCTTTTCGGAGTTTTTGATGgtatattttt ... ctctttccagGTCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGAAAAACCTGTTTAGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTAGCTCTCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTGATGGTGAAGTCGTTGGCCTTTTCGGAGTTTTTGATGgtatatttttatcttcctctcttcttcatctcctggttgtacactgattggaaaatatgccaaaatattgtacgtagaactcatgctatgtgttcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaata