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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGGACACCAGGATTTCATTCTCTTGGGGTGTATCAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAAgtaagactcaaatttctaggatttttatcctgtaaatttaatattatttattcttcatatctcttttgttaacctgtgtttatgtggtggtggtttcag

Basic information

species Glycine max
transcript GLYMA06G05550.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G05550.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0008g01060.t01 (Vitis vinifera), 5'ss of exon 2
ACAAGGACACCAGGATTTCATTCTCTTGGGGTGTATCAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAAgtaagactcaaatttctaggatttttatcctgtaaatttaatattatttattcttcatatctcttttgttaacctgtgtttatgtggtggtggtttcag
||||| |||  |||||| ||||||||||| |||||||||||| |||| ||| ||||||||||||||||| |||||||||| |||||||||| || || ||  |   |||||||  ||          | || ||| | |   | |    ||||  |||| | || |||  ||      |      
ACAAGAACAGAAGGATTCCATTCTCTTGGTGTGTATCAATCTCTGAAGAAGATACTAAAGCATGAAGGTGTTCTAGGATTTTATAAgtaagtctgaagttattca-atttttactct---------ttgttgttt-tccccaaaaatgtttttcctaacttatgcttaattgtcttcag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6502451|gb|AW203824.1|AW203824
EST:     CAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAA                         GGGAAATGGAGCTAGTGTTATCCGCATTGTTCCGTATGCAGCCTTGCATTT
genomic: CAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAAgtaagactca ... gtggtttcagGGGAAATGGAGCTAGTGTTATCCGCATTGTTCCGTATGCAGCCTTGCATTT
EST: gi|7685547|gb|AW756195.1|AW756195
EST:     CAATCTATGAATAAGTTACTAAAGCATGAAGGTTNTCTAGGATTATATAA                         GGGAAATGGAGCTAGTGTTATCCGCATTGTTCCGTATGCAGCCTTGCATTT
genomic: CAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAAgtaagactca ... gtggtttcagGGGAAATGGAGCTAGTGTTATCCGCATTGTTCCGTATGCAGCCTTGCATTT
EST: gi|16996901|gb|BM086273.1|BM086273
EST:     CAATCTATGAATAAGTTACTAAAGCATGAAGGGTTTCTAGGATTATATAA                         GGGAAATGGAGCTAGTGTTATCCGCATTGGTCCCG-ATGCAGCCCTGCATT
genomic: CAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAAgtaagactca ... gtggtttcagGGGAAATGGAGCTAGTGTTATCCGCATTGTTCC-GTATGCAGCCTTGCATT