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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCTCTAAGAAATACGCCGTACACTCCGATTGGAAGGCTCATATGAAAACTTGCGGCACCAGAGAGTACCGATGCGACTGCGGCACCTTGTTCTCTAGgtatccaaatcaaaatgaaaatattcattacttgtcttttttatttttcaatgtaatgtcgctaacagtaatacgtgtatctttcttaaag

Basic information

species Glycine max
transcript GLYMA06G03630.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G03630.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g10140.1 (Oryza sativa), 5'ss of exon 2
GCTGCTCTAAGAAATACGCCGTACACTCCGATTGGAAGGCTCATATGAAAACTTGCGGCACCAGAGAGTACCGATGCGACTGCGGCACCTTGTTCTCTAGgtatccaaatcaaaatgaaaatattcattacttgtcttttttatttttcaatgtaat-gtcgctaacagtaatacgtgtatctttcttaaag--
  ||||| ||||| |||||||| || ||||| |||||||| || |  || || |||||| || | |||||||| ||||||||||||||||| |||||  |||        |     ||     |||    |   |||     ||  |  |||  |   | |||  | | | |   | | |||            
AGTGCTCCAAGAAGTACGCCGTCCAGTCCGACTGGAAGGCGCACACCAAGACCTGCGGCTCCCGCGAGTACCGCTGCGACTGCGGCACCTTATTCTCACGgtccgtcttccctctcga-----ttcccatccaatctcc---atcctctaatcgagcagccgccgatactgaccggcgaatcgccgccgcgcag