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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATGGCAGGCACAGAAGCTGTGAATATGTCCAAAACTTATTCATTGAACATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGgtgagaatcgtaatctaaggtttgtgtcagttgtaatttttcatttgttaatagcaatttcaaaattatccactattggagcaagtatccatattatata...

Basic information

species Glycine max
transcript GLYMA06G03070.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G03070.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G060284_T02 (Zea mays), 5'ss of exon 2
GAGATGGCAGGCACAGAAGCTGTGAATATGTCCAAAACTTATTCATTGAACATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGgtgagaatcgtaatctaaggtttgtg----tcagttgtaatttttcatttgttaatagcaatttcaaaattatccactattgg-agcaagtatccatattatata
||  ||||    ||  |  | | |||||   | || |  || || ||||| ||||| ||||| ||||||||||||||||| ||||| ||  ||| |||||||  ||  |  | ||  || | |       | |  || |   | ||  |   | || | |||  |||  |||    | |  |  |  |  |  |  | || |   
GAATTGGCTCAAACTAACACCGGGAATACACCTAAGAGCTACTCTTTGAATATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatccagattcacagctctacactgcttaaatgaagcatctctatctatgattggaat--caattttactgcccagagacattacttgcctttgttct---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19935508|gb|BQ080469.1|BQ080469
EST:     CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGgtgagaatcg ... tttattttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|9898659|gb|BE607627.1|BE607627
EST:     CATGTTTAAAGACTACGTTCCTATGTGTGTCTTCTCTGAGACTATCCAAG                         GTGTGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAG
genomic: CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGgtgagaatcg ... tttattttagGTG-GCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAG
EST: gi|58023918|gb|CX710659.1|CX710659
EST:     CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGgtgagaatcg ... tttattttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|19935238|gb|BQ080268.1|BQ080268
EST:     CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGgtgagaatcg ... tttattttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|192294408|gb|FG987337.1|FG987337
EST:     CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGgtgagaatcg ... tttattttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|298182572|gb|HO031307.1|HO031307
EST:     CATGTTTGAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGgtgagaatcg ... tttattttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|19348661|gb|BM893193.1|BM893193
EST:     CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGgtgagaatcg ... tttattttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|151398032|gb|EV267910.1|EV267910
EST:     CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGgtgagaatcg ... tttattttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|298193573|gb|HO040221.1|HO040221
EST:     CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGgtgagaatcg ... tttattttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|213601504|gb|DB970420.1|DB970420
EST:     CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGgtgagaatcg ... tttattttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|209722481|gb|BW668756.1|BW668756
EST:     CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGgtgagaatcg ... tttattttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|58024109|gb|CX710850.1|CX710850
EST:     CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGgtgagaatcg ... tttattttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|298191952|gb|HO036034.1|HO036034
EST:     CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGgtgagaatcg ... tttattttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|7147539|gb|AW509461.1|AW509461
EST:     CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGgtgagaatcg ... tttattttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|192300028|gb|FG991846.1|FG991846
EST:     CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGgtgagaatcg ... tttattttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|298170674|gb|HO019298.1|HO019298
EST:     CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGgtgagaatcg ... tttattttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|209702688|gb|BW675663.1|BW675663
EST:     CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGgtgagaatcg ... tttattttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|9564300|gb|BE473809.1|BE473809
EST:     CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: CATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGgtgagaatcg ... tttattttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC