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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTATTTTTCTTGCTATCTATAGCATATTATGCTTTCTTTGCTCCTTTTCTGGGAAAGGACATCTATGAATATGTGGCTATTGGTGTTTACTCTGTATTGgtaagcagtactctgattcttctctgctccccctccgctcatgtgtttttcatacggaagattcgttctaaaaaatgggattcaatattccttcattgacttcaacttaaatgttgaactgcag

Basic information

species Glycine max
transcript GLYMA06G01810.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01810.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G33640.1 (Arabidopsis thaliana), 5'ss of exon 2
TGTATTTTTCTTGCTATCTATAGCATATTATGCTTTCTTTGCTCCTTTTCTGGGAAAGGACATCTATGAATATGTGGCTATTGGTGTTTACTCTGTATTGgtaagcagtactctgattcttctctgctccccctccgctcatgtgtttttcatacggaagattcgttctaaaaaatgggattcaatattccttcattgacttcaacttaaatgttgaact-gcag
|||||||||||||||| || | || || ||||| ||||||||||| ||||| |||||  |  ||||||||||| | || ||||||||||||||| |  |||||||   ||    ||  | |   | | |    |  ||||     |   | | ||      ||  |   | |          | ||     || ||| | |  |  ||  ||  |||  |  |||
TGTATTTTTCTTGCTAACTGTCGCTTACTATGCCTTCTTTGCTCCATTTCTTGGAAACAAACTCTATGAATATATTGCCATTGGTGTTTACTCTTTCCTGgtaagacctaaaacgaaacattgttacac----taagctctcagttgcattaaacttgttctttatctcacatctctcatcactatggcaatttattca-tagagtttgcataatgattttacag

upper sequence: GLYMA06G01810.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0122g00920.t01 (Vitis vinifera), 5'ss of exon 2
TGTATTTTTCTTGCTATCTATAGCATATTATGCTTTCTTTGCTCCTTTTCTGGGAAAGGACATCTATGAATATGTGGCTATTGGTGTTTACTCTGTATTGgtaagcagtactctgattcttctctgctccccctccgctcatgtgtttttcatacggaagattcgttctaaaaaatgggattcaatattccttcattgacttcaacttaaatgttgaactgcag
 || ||||||||||||||| | |||| |||||| || |||||||| || || || ||||| ||||||||||||||||| ||  ||||||| ||| | |||||||  |  |||  |    |  | | ||      |   |     |||| || |       ||  |   ||   | |    ||||| ||| || | || |                         
AGTCTTTTTCTTGCTATCTGTCGCATTTTATGCCTTTTTTGCTCCCTTCCTTGGGAAGGATATCTATGAATATGTGGCAATCAGTGTTTATTCTTTCTTGgtaaata-cacttgggccttagttttcttattaactttttcaaagtttctctttt-----atctgccttatttattattgttcaa-atttctactttcag------------------------