1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCGATTTTGAGGAGCTCCAGGCCGTCGACGCCTTTCGCCAATCCTTGATCATGGACGAATTGCTCCCTGAAGCCTTTGCTGATTACCATATGATGTTAAGgtaacaacctcccccacaagaattttaatagcaaaaaaggtattaaatttaccaaggttttaaattgcggtcgttgtctcaatttcgtcacattccttga...
species | Glycine max |
transcript | GLYMA06G01260.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGGACGAATTGCTCCCTGAAGCCTTTGCTGATTACCATATGATGTTAAG ATTTTTGAAAGCGAGGAAGTTCGATATTGAAAAGGCAAAACATATGTGGACEST: gi|209723879|gb|BW675225.1|BW675225
genomic: ATGGACGAATTGCTCCCTGAAGCCTTTGCTGATTACCATATGATGTTAAGgtaacaacct ... gatttttaagATTTTTGAAAGCGAGGAAGTTCGATATTGAAAAGGCAAAACATATGTGGAC
EST: ATGGACGAATTGCTCCCTGAAGCCTTTGCTGATTACCATATGATGTTAAG ATTTTTGAAAGCGAGGAAGTTCGATATTGAAAAGGCAAAACATATGTGGACEST: gi|213587825|gb|DB959649.1|DB959649
genomic: ATGGACGAATTGCTCCCTGAAGCCTTTGCTGATTACCATATGATGTTAAGgtaacaacct ... gatttttaagATTTTTGAAAGCGAGGAAGTTCGATATTGAAAAGGCAAAACATATGTGGAC
EST: ATGGACGAATTGCTCCCTGAAGCCTTTGCTGATTACCATATGATGTTAAG ATTTTTGACAGCGAGGAAGTTCGATATTGAAAAGGCAAAACATATGTGGACEST: gi|213607792|gb|DB959117.1|DB959117
genomic: ATGGACGAATTGCTCCCTGAAGCCTTTGCTGATTACCATATGATGTTAAGgtaacaacct ... gatttttaagATTTTTGAAAGCGAGGAAGTTCGATATTGAAAAGGCAAAACATATGTGGAC
EST: ATGGACGAATTGCTCCCTGAAGCCTTTGCTGATTACCAT--GATGTTAAG ATTTTTGATAGCGAGGAAGTTCGATATTGAAAAGGCAAAACATATGTGGAC
genomic: ATGGACGAATTGCTCCCTGAAGCCTTTGCTGATTACCATATGATGTTAAGgtaacaacct ... gatttttaagATTTTTGAAAGCGAGGAAGTTCGATATTGAAAAGGCAAAACATATGTGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGATTTTGAGGAGCTCCAGGCCGTCGACGCCTTTCGCCAATCCTTGATCATGGACGAATTGCTCCCTGAAGCCTTTGCTGATTACCATATGATGTTAAGgtaacaacctcccccacaagaattttaatagcaaaaaaggtattaaatttaccaaggttttaaattgcggtcgttgtctcaatttcgtcacattccttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT