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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTGgtaagtttcacatgtaaggtgatatttatcttcaatttattccacgtctgctctgttgttttgttttatgtttctgtatctgttccattttctggactct...

Basic information

species Glycine max
transcript GLYMA06G01180.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01180.2 (Glycine max), 5'ss of exon 2
lower sequence: AT4G39100.1 (Arabidopsis thaliana), 5'ss of exon 3
GTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTGgtaagt-ttcacatgtaaggtgatatttatcttcaatttattccacgtctgctctgttgtt--ttgttttatgtttctgtatctgttccattttctggactct
||  || || ||||||||||| || ||||| |||||| | ||||||||||||||||  ||  |||| |||||||| ||||| | |    ||| | |    || ||| |  |  |       ||||   ||  | || |  | ||  ||||||  |    |  |      | |
GTTCTGCAAGTGTGAGATGCCGTATAACCCAGATGACTTGATGGTGCAATGCGAGGAGTGTTCTGAGTGgtaagtgttcacttatt---tgaaactctgttttaatcttcttgagtcacaatctggaattgctcgtatgtttttcgtgtatccatgaggtcctagttgatat

upper sequence: GLYMA06G01180.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0038g00160.t01 (Vitis vinifera), 5'ss of exon 3
GTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTGgtaagtttcacatgtaaggtgatatttatcttcaatttattccacgtctgctctgttgttttgttttatgtt--tctgtatctgttccattttctggactct-
|||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||| |||||||| |||| ||||       |  |      || |  ||   ||| |  || || || |     | ||  || ||  ||  | || || ||||||      |  ||| | 
GTATTGTAAATGCGAGATGCCTTACAACCCCGATGACCTAATGGTGCAGTGTGAGGGGTGCACTGATTGgtgagttatttgctttggacctgtttaagattt--tttgtctcaggtttggtggacagattctttgtaacttgatttggat-tgttcctcagaatatactttt

upper sequence: GLYMA06G01180.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ26805 (Selaginella moellendorffii), 5'ss of exon 3
GTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTGgtaagtttcacatgtaaggtgatatttatcttcaatttattccacgtctgctctgttgttttgttttatgtttctgtatctgttccattttctggactct
||| || || || ||||||||||||||||| ||||| || |||||||| || ||||  ||||  ||||||||||  |||        ||     | |  | |||     |   |  |  ||| | ||       |                                  
GTACTGCAAGTGCGAGATGCCTTACAACCCGGATGATCTTATGGTGCAGTGTGAGGAGTGCAAAGACTGgtaagaatca--------gtttctctcaaatccaaaagccttggcagc--ctccgatgaaaaaaatggcag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019940|gb|CX706682.1|CX706682
EST:     CCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTG                         GTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
genomic: CCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTGgtaagtttca ... atttattcagGTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
EST: gi|9985362|gb|BE659470.1|BE659470
EST:     CCTTNNAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTG                         GTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
genomic: CCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTGgtaagtttca ... atttattcagGTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
EST: gi|208042660|gb|GD842668.1|GD842668
EST:     CCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTG                         GTTCCATCCTGCTTGTAT
genomic: CCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTGgtaagtttca ... atttattcagGTTCCATCCTGCTTGTAT
EST: gi|254336272|gb|GR842451.1|GR842451
EST:     CCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTG                         GTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
genomic: CCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTGgtaagtttca ... atttattcagGTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
EST: gi|58022943|gb|CX709684.1|CX709684
EST:     CCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTG                         GTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
genomic: CCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTGgtaagtttca ... atttattcagGTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
EST: gi|208309370|gb|GE106788.1|GE106788
EST:     CCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTG                         GTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
genomic: CCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTGgtaagtttca ... atttattcagGTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
EST: gi|31462782|gb|CD404810.1|CD404810
EST:     CCTTACAACCCTGATGACCTAATGGTGCNATGCGAGGGCTGCACTGACTG                         GTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCCAAAGACTTGA
genomic: CCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTGgtaagtttca ... atttattcagGTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
EST: gi|193605590|gb|FK559018.1|FK559018
EST:     CCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTG                         GTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
genomic: CCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTGgtaagtttca ... atttattcagGTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
EST: gi|17401428|gb|BM178210.1|BM178210
EST:     CCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTG                         GTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
genomic: CCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTGgtaagtttca ... atttattcagGTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA