Sequence
atgc intronic sequence ATGC exonic sequenceTGGGGGATATGGAGGTTCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGgttaattggtttttctgtaccaaccctctatttttgtttgtgttttatctctacttataccctccctgtttggctgataatgaaatatattgtttttcag
Basic information
species | Glycine max |
transcript | GLYMA06G01120.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G01120.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0038g00460.t01 (Vitis vinifera), 5'ss of exon 2
TGGGGGATATGGAGGTTCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGgttaattggtttttctgtaccaaccctctatttttgtttgtgttttatctctacttataccctccctgtttggctgataatgaaatatattgtttttcag
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TGGGGGATACGGGGGTTCAGATAATGTAATTACTGATGAGGCAGAGCTTCAGCAGCATCAGAAACTTGAAAAGCTTTACATATCAACACGTGCTGGAAAGgttgcttaatcctcctgtggttcatttgtgactcaatttgtttatttcctcaacttataaatttctatatcatttttcag--------------------
upper sequence: GLYMA06G01120.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0001g13530.t01 (Vitis vinifera), 5'ss of exon 2
TGGGGGATATGGAGGTTCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGgttaattggtttttctgtaccaaccctctatttttgtttgtgttttatctctacttataccctccctgtttggctgataatgaaatatattgtttttcag
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TGGTGGTTATGGTGGCCCAGATAATGTCCTCACTGATGAGTCAGAACTTCAGCAACATCAAAAACTTGAGAAACTTTACATATCAACCCGTGCTGGGAAGgttacacaatgcctct-tacttctatgtaactgtcctgtatatttcttcttaacctttgtatatccttttctctcactag--------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193633792|gb|FK582426.1|FK582426EST: AGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAG CATTATCAAAGGGATATTGTCCGTGGTGTGGAAGGTTATATTGTAACTGGA
genomic: AGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGgttaattggt ... tgtttttcagCATTATCAAAGGGATATTGTCCGCGGTGTGGAAGGTTATATTGTAACTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGGGGATATGGAGGTTCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGgttaattggtttttctgtaccaaccctctatttttgtttgtgttttatctctacttataccctccctgtttggctgataatgaaatatattgtttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA