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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTGCAGATCATGATAATTACCATGAGTTTTGTCGTCTTCTTGGTCGGTTCAGAGTGAATTATCAGgtagacgtatgtgtagttttttctcctttttgtggtgtatctagtggtttctatttctaattggtagtaatgctatgtacataagcagggagatggggtt...

Basic information

species Glycine max
transcript GLYMA06G00520.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G00520.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g42050.1 (Oryza sativa), 5'ss of exon 8
GTCTTGCAGATCATGATAATTACCATGAGTTTTGTCGTCTTCTTGGTCGGTTCAGAGTGAATTATCAGgtagacgtatgtgtagttttttctcctttttgtggtgtatctagtggtttctatttctaa---ttggtagtaatgctatgtacataagcagggagatggggtt
||||||| |||||||  |||||||||||||| || || |||||||| || |||| ||||||||  ||||| |   |   |||   ||    |      ||  |   |  |  | |||| | | || |    ||| |  |  | || |     |          |  |  | 
GTCTTGCTGATCATGGAAATTACCATGAGTTCTGCCGCCTTCTTGGACGTTTCAAAGTGAATTTCCAGgttggaatcc-tgttacttaaaatgaaggatgaagctaacttgtttgttt-tgtgtcaaggatttgctctttgttctttccctttgcattcttttacagaat-

upper sequence: GLYMA06G00520.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G06120.1 (Arabidopsis thaliana), 5'ss of exon 10
GTCTTGCAGATCATGATAATTACCATGAGTTTTGTCGTCTTCTTGGTCGGTTCAGAGTGAATTATCAGgtagacgtatgtgt-agttttttctcctttttgtggtgtatctagtggtttctatttctaattggtagtaatgctatgtacataa-gcagggagatggggtt
||||||| ||||||||||||||||| | ||| || ||||| ||||| || || ||  |||||||||||||| |  | |  || || ||  | ||   |||   |  ||    ||   | | ||||    |  || |||     |  |  ||        |  |||   ||
GTCTTGCTGATCATGATAATTACCACGTGTTCTGCCGTCTACTTGGGCGTTTTAGGCTGAATTATCAGgtaaatttctcggttagattcctttctagtttacagattac--ggtttgtacaattttgtttgtgttgtagcttgaaatttatgttatgatgccatgtactt

upper sequence: GLYMA06G00520.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0067g01920.t01 (Vitis vinifera), 5'ss of exon 10
GTCTTGCAGATCATGATAATTACCATGAGTTTTGTCGTCTTCTTGGTCGGTTCAGAGTGAATTATCAGgtagacgtatg------tgtagttttttctcctttttgtggtgtatctagtggtttctatttctaattggtagtaat-gctatgtacataagcagggagatggggtt
||||||  |||||||||||||||||||| ||||||||||| ||||| || |||||||| ||||||||||||    | |       || | |||||| |   |||        || || ||   | |  |   |  |    |  || ||| | |  |   || |||   |      
GTCTTGTTGATCATGATAATTACCATGAATTTTGTCGTCTCCTTGGACGTTTCAGAGTAAATTATCAGgtaattttctaaattaatgcatttttttttatatttaacaaca-atgtattgtcatatggtcacatctttaggagattgctctttgtaccggctgggcttt------