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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCTCCCACCGAAGACGCTGTAGTTGCCACTGACCCTCTCACGAAGCAGGATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAGgttccgttttttttttttttatgtttcttcttcttttttatttttgttacttataatcattcttttatcgtgcttttctggttaggtttcttgaagctttaagattccaactgcctcttaattacttcatttattcgcgtggtcttgcag

Basic information

species Glycine max
transcript GLYMA05G37850.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209707541|gb|BW665000.1|BW665000
EST:     GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAG                         AATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCC
genomic: GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAGgttccgtttt ... ggtcttgcagAATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCC
EST: gi|20449385|gb|BQ253509.1|BQ253509
EST:     GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAG                         AATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCC
genomic: GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAGgttccgtttt ... ggtcttgcagAATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCC
EST: gi|213590516|gb|DB968094.1|DB968094
EST:     GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAG                         AATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCC
genomic: GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAGgttccgtttt ... ggtcttgcagAATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCC
EST: gi|192303373|gb|FG997431.1|FG997431
EST:     GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAG                         AATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCC
genomic: GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAGgttccgtttt ... ggtcttgcagAATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCC
EST: gi|209718854|gb|BW669041.1|BW669041
EST:     GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAG                         AATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCC
genomic: GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAGgttccgtttt ... ggtcttgcagAATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCC
EST: gi|213613811|gb|DB961308.1|DB961308
EST:     GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAG                         AATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCC
genomic: GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAGgttccgtttt ... ggtcttgcagAATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCC