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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCCTTTAGATACTACAGAGGAGGAGTTGAGGGCACGGTTGAGGGATGGATCAGTATTATGCAGCATTTTGGACAATCTTGTTCCTGGTTCGGTGAAGgtagtaggggtgtccttcattgtgttctatacttgtttattgcctttgttttgcatgtgtgtagtatgcataggtttaatgttttttgttttctaatgtgcggacattaagttagagagcttgtttatttttgtcctctttcttctaagaaatgcatttttgacttcag

Basic information

species Glycine max
transcript GLYMA05G37800.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193474581|gb|FK439276.1|FK439276
EST:     GATCAGTATTATGCAGCATTTTGGACAATCTTGTTCCTGGTTCGGTGAAG                         GGAAGTGGTTCTTTGAATGAGCTAATTGGTGTGAAAAGGTTTCTGGTAGCT
genomic: GATCAGTATTATGCAGCATTTTGGACAATCTTGTTCCTGGTTCGGTGAAGgtagtagggg ... ttgacttcagGGAAGTGGTTCTTTGAATGAGCTAATTGGTGTGAAAAGGTTTCTGGTAGCT
EST: gi|193684923|gb|FK623227.1|FK623227
EST:     GATCAGTATTATGCAGCATTTTGGACAATCTTGTTCCTGGTTCGGTGAAG                         GGAAGTGGTTCTTTGAATGAGCTAATTGGTGTGAAAAGGTTTCTGGTAGCT
genomic: GATCAGTATTATGCAGCATTTTGGACAATCTTGTTCCTGGTTCGGTGAAGgtagtagggg ... ttgacttcagGGAAGTGGTTCTTTGAATGAGCTAATTGGTGTGAAAAGGTTTCTGGTAGCT
EST: gi|193470979|gb|FK435604.1|FK435604
EST:     GATCAGTATTATGCAGCATTTTGGACAATCTTGTTCCTGGTTCGGTGAAG                         GGAAGTGGTTCTTTGAATGAGCTAATTGGTGTGAAAAGGTTTCTGGTAGCT
genomic: GATCAGTATTATGCAGCATTTTGGACAATCTTGTTCCTGGTTCGGTGAAGgtagtagggg ... ttgacttcagGGAAGTGGTTCTTTGAATGAGCTAATTGGTGTGAAAAGGTTTCTGGTAGCT