1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAAGCATTTGGGGTGATAGTGGACTATGCCAGTACTCCTGATGCATTGTCTAGATTGCTTGATTCTGTAAGAGAGCTTGGACCTCGCAGGGTTATAACTGgtatgtttgtgttgtgcttctcttattgctgcaaaatatttcctttctaattttggtttggacatgaagaaattaaaccaaagcatttttctgttggaaa...
species | Glycine max |
transcript | GLYMA05G37740.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TAGATTGCTTGATTCTGTAAGAGAGCTTGGACCTCGCAGGGTTATAACTG TCATTGGATGCTGTGGTGAGGGCGACAGGGGGAAGAGGCCTGTGATGACCAEST: gi|6481420|gb|AW200691.1|AW200691
genomic: TAGATTGCTTGATTCTGTAAGAGAGCTTGGACCTCGCAGGGTTATAACTGgtatgtttgt ... cattttgaagTCATTGGATGCTGTGGTGAGGGCGACAGGGGGAAGAGGCCTGTGATGACCA
EST: TAGATTGCTTGATTCTGTAAGAGAGCTTGGACCTCGCAGGGTTATAACTG TCATTGGATGCTGTGGTGAGGGCGACAGGGGGAAGAGGCCTGTGATGACCAEST: gi|51863815|gb|CV128296.1|CV128296
genomic: TAGATTGCTTGATTCTGTAAGAGAGCTTGGACCTCGCAGGGTTATAACTGgtatgtttgt ... cattttgaagTCATTGGATGCTGTGGTGAGGGCGACAGGGGGAAGAGGCCTGTGATGACCA
EST: TAGATTGCTTGATTCTGTAAGAGAGCTTGGACCTCGCAGGGTTATAACTG TCATTGGATGCTGTGGTGAGGGCGACAGGGGGAAGAGGCCTGTGATGACCAEST: gi|27427163|gb|CA938683.1|CA938683
genomic: TAGATTGCTTGATTCTGTAAGAGAGCTTGGACCTCGCAGGGTTATAACTGgtatgtttgt ... cattttgaagTCATTGGATGCTGTGGTGAGGGCGACAGGGGGAAGAGGCCTGTGATGACCA
EST: TAGATTGCTTGATTCTGTAAGAGAGCTTGGACCTCGCAGGGTTATAACTG TCATTGGATGCTGTGGTGAGGGCGACAGGGGGAAGAGGCCTGTGATGACCA
genomic: TAGATTGCTTGATTCTGTAAGAGAGCTTGGACCTCGCAGGGTTATAACTGgtatgtttgt ... cattttgaagTCATTGGATGCTGTGGTGAGGGCGACAGGGGGAAGAGGCCTGTGATGACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGCATTTGGGGTGATAGTGGACTATGCCAGTACTCCTGATGCATTGTCTAGATTGCTTGATTCTGTAAGAGAGCTTGGACCTCGCAGGGTTATAACTGgtatgtttgtgttgtgcttctcttattgctgcaaaatatttcctttctaattttggtttggacatgaagaaattaaaccaaagcatttttctgttggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattaaa