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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctatactctttccttttccccactacaatattgcattcattccattaatttggcttataaatgagtatatattctgactttgttattaatgtggttaatttatgatggtatgatataataattgtag

Basic information

species Glycine max
transcript GLYMA05G37730.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37730.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g44630.2 (Oryza sativa), 5'ss of exon 3
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctatactctttccttttccccactacaatat-tgcattcattccattaatttggcttata-aatgagtatatattctgactttgttattaatgtggttaatttatgatggtatgatataataattgtag
||| || ||||| ||||||||||||||||| ||  | || ||||||||||| ||||| ||||||||||||||||| || || || |||||||| ||||||||| |   ||  |||  | |||   || |   |||| || |        | || || |  |  |  ||||||| |||   |||   |   || |    |    ||                             
TGACGGTCTTGGTGCTGAGATTGTTGGCACCTTCATCCTGGTCTACACCGTCTTCTCAGCCACTGATGCCAAGAGGAATGCCAGGGACTCACATGTTCCTgtaag---tatccttctcctttttgcagtgtgatatgtgaaagttcagtagtagttagtgtggtctaatgagt-tatgcactgtgataactaatt-catcaccaa-----------------------------

upper sequence: GLYMA05G37730.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os04g47220.1 (Oryza sativa), 5'ss of exon 1
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctatactctttccttttccccactacaatattgcattcattccattaatttggcttataaatgagtatatattctgactttgttattaatgtggttaatttatgatggtatgatataataattgtag
 || || || || || ||||| || ||||| ||  | || ||||||||||| ||||| ||||| || |||||||| ||||| || ||||| |||||||| || |  |||||    | ||  |     |   ||   | ||   ||   | || |||  ||  |   |||||        ||| |||  | ||||| ||    || |   |  |                   
CGACGGCCTCGGCGCCGAGATCGTCGGCACCTTCATCCTCGTCTACACCGTCTTCTCCGCCACCGACGCCAAGAGGAACGCCAGGGACTCCCACGTTCCGgt-tagtataccaactactact----gcagtaaagattcagagatggaagtatttttactgttttctgagtga-----ttgatttttgttttaatttgcgcgatcttccacag-------------------

upper sequence: GLYMA05G37730.1 (Glycine max), 5'ss of exon 2
lower sequence: AC209208.3_FGT002 (Zea mays), 5'ss of exon 2
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctatactctttccttttccccactacaatattgcattcattccattaatttggcttataaatgagtatatattctgactttgttat-taatgtggttaatttatgatggtatgatataataattgtag
|||||| ||||| ||||||||||||||||| ||  | || ||||||||||| ||||| ||||| ||||||||||| || || || ||||| || ||||||||| |   ||||||| |  || ||       | | |||  |   ||    || ||  ||||    || ||| |   ||   ||     ||| ||||    | || ||                          
TGATGGCCTTGGCGCTGAGATTGTTGGCACCTTCATCCTAGTCTACACCGTCTTCTCAGCCACCGATGCCAAGAGGAATGCCAGGGACTCCCATGTTCCTgtaag---tactcttccacttcccttttcctagt-ttgt-tcagttgttatagttctgcttg--gattagtttggcttagcacacatatatgtaattgaatcaactt--------------------------

upper sequence: GLYMA05G37730.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G392975_T03 (Zea mays), 5'ss of exon 2
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctatactctttccttttccccactacaatattgcattcattccattaatttggcttataaatgagtatatattctgactttgttattaatgtggttaatttatgatggtatgatataataattgtag
 || || ||||| || ||||| |||||||| ||  | || ||||||||||| ||||| ||||| ||||||||||| ||||| || ||||| || || || ||| |   |||||||     || |    | | |  |||       | ||    || || || |   ||| |  | |||   |      |||  |     | |  | | | | |||                 
GGACGGCCTTGGCGCAGAGATCGTTGGCACCTTCATCCTAGTCTACACCGTCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCCgtaag---tactcttcgtcctttcgttttcctagtttg-------ttcagctgttagggttctgcttgaattcacatttgca------tatctaaaatataagatgacggttgtaa----------------

upper sequence: GLYMA05G37730.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0046g02420.t01 (Vitis vinifera), 5'ss of exon 2
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctatactctttccttttccccactacaatattgcattcattccattaatttggcttataaatgagtatatattctgactttgttattaatgtggttaatttatgatggtatgatataataattgtag
 ||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||| || |||||| | |||  ||  || || |  |  ||       || || |||     |  ||||  ||||| ||        | | ||  |   |   ||| | | || | || |                        
CGATGGGCTTGGTGCTGAGATAGTTGGCACTTTTGTTCTTGTCTACACTGTTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaag-tattttccctcattgtatcatctctctgtatgtatgcatatgtgtggtttgttttatagat-----ctaactttg--tcaataggtaaagcgattgagttct------------------------

upper sequence: GLYMA05G37730.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0025g03390.t01 (Vitis vinifera), 5'ss of exon 2
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctatactctttccttttccccactacaatattgcattcattccattaatttggcttataaatgagtatatattctgactttgttattaatgtggttaatttatgatggtatgatataataattgtag
|||||| ||||| ||||||||||||||||| || |||||||| ||||| || |||||||| |||||||||||||||||||| |||||||| ||||| |||||||| ||| |||||   | || | ||     ||    |  || ||   | |  ||    | | | |     |  | ||| | ||| |  ||  | |  ||                               
TGATGGCCTTGGTGCTGAGATTGTTGGCACCTTCGTTCTTGTTTACACTGTCTTCTCTGCTACTGATGCCAAGAGAAACGCCAGAGACTCTCACGTCCCTgtatg-tattctcttatttctttctcaacttcatgagaccatccttgtttcatattatgattttactttccttggaatcttattttttgttttttctcatt-------------------------------

upper sequence: GLYMA05G37730.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0046g02410.t01 (Vitis vinifera), 5'ss of exon 2
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctatactctttccttttccccactacaatattgcattcattccattaatttggcttataaatgagtatatattctgactttgttattaatgtggttaatttatgatggtatgatataataattgtag
|| ||| ||||| |||||||| |||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| || ||||||||||| ||||| ||| | ||| |||| ||  | |    | ||||  | |   |   ||       |||  | |||  |    ||||| ||||   |   ||  ||| ||| || |  |                          
TGCTGGGCTTGGTGCTGAGATAGTTGGCACTTTTGTTCTTGTCTACACTGTTCTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTTCCAgtaag-tattctctctctgtgtatata-tacataaatatgtgggtttt----gttttacatatctagttatatat-ttctttgtcaattggtaaagtgattgagctg-------------------------

upper sequence: GLYMA05G37730.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ18960 (Selaginella moellendorffii), 5'ss of exon 2
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctatactctttcctt---------------ttccccact---acaatattgcattcattccattaatttggcttataaatgagtatatattctgactttgttattaatgtggttaatttatgatggtatgatataataattgtag-------------------------------------------------
 ||||| |||||||||||||||||||| || || ||||| |||||||| || ||||| |||||||||||||||||||  || |||||||| || || || ||| | | |  |||| | |                |||||| ||     | | |||| ||  |||   | || |   |  |   ||  | |      |    ||| | |   |    |||  || |  |  | |  | |  |  |  | |                                                 
AGATGGTCTTGGAGCTGAGATTGTTGGTACCTTCGTTCTCGTCTACACGGTCTTCTCCGCCACTGATGCCAAGAGAAGTGCCAGAGACTCCCATGTCCCGgtacgtt-tcttcttccatccaaagctttggttgattcccctctcatgaagttttgcttttcttcttcttatct---tcttgtgtggttttcctagtttttcttgctgtacttcctcttatcttctccttatctcttctcctcctcatggatagatttaagatatgttccaagctcacaaactttggcgatttctacag

upper sequence: GLYMA05G37730.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ11572 (Selaginella moellendorffii), 5'ss of exon 2
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctatactcttt--------cctt------ttccccactacaatattgcattcattccattaatttggcttataaatgagtatatatt--ctgactttgttattaatgtggttaatttatgatggtatgatataataattgtag-------------------------------------------------
 ||||| |||||||||||||||||||| || || ||||| ||||||||||| ||||| |||||||||||||||||||  || |||||||| || || || ||| | |   |  |          | ||      |||||| ||   ||   |  ||  ||   ||  | |    |     || |  | |  |   |    ||| | |   |    |||  || |  |  | |  | |  |  |  | |                                                 
AGATGGTCTTGGAGCTGAGATTGTTGGTACCTTCGTTCTCGTCTACACCGTCTTCTCCGCCACTGATGCCAAGAGAAGTGCCAGAGACTCCCATGTCCCGgtacgtttctccttccatccaaagctttggttgattcccccctctcatgaagttttacttttcttcttcttatcttcttgtgtggttttcctagtttttcttgctgtacttcctcttatcttctccttatctcttctcctcctcatggatagatttaagatatgttccaagctcacaaactttggcgatttctacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208265750|gb|GE062237.1|GE062237
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCAC
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCAC
EST: gi|22930616|gb|BU547763.1|BU547763
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|151410226|gb|EV280041.1|EV280041
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|209706286|gb|BW680673.1|BW680673
EST:     ACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: ACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|192311795|gb|FK003166.1|FK003166
EST:     TTTTCTCTGCCACTGATGCCAAAAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|7284289|gb|AW596883.1|AW596883
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTACCATCGGATTTGCTGTGTNCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|209718916|gb|BW669105.1|BW669105
EST:     CTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: CTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|151397692|gb|EV267565.1|EV267565
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|8826812|gb|BE210542.1|BE210542
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|193546812|gb|FK501365.1|FK501365
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGA
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGA
EST: gi|31466018|gb|CD408046.1|CD408046
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|31309774|gb|CD394977.1|CD394977
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|208190673|gb|GD988717.1|GD988717
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTACCAACTTACCCATCGGATTTGCTAGTGTTCTTGGTCCAC
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCT-CCA-CTT-CCCATCGGATTTGCT-GTGTTCTTGGTCCAC
EST: gi|192330652|gb|FK022293.1|FK022293
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTG
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTG
EST: gi|192311794|gb|FK003165.1|FK003165
EST:     TTTTCTCTGCCACTGATGCCAAAAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|192312711|gb|FK003951.1|FK003951
EST:     TTTCCTCTGCCACTGATGCCAAAAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTC-TCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|208141616|gb|GD939164.1|GD939164
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTTCTTTGGTCCACTTGG
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTT-CTT-GGTCCACTTGG
EST: gi|58018784|gb|CX705526.1|CX705526
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|208254760|gb|GE051250.1|GE051250
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCAC
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCAC
EST: gi|12773007|gb|BG237934.1|BG237934
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGAGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|10255191|gb|BE822957.1|BE822957
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|58019012|gb|CX705754.1|CX705754
EST:     AGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: AGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|31468418|gb|CD410446.1|CD410446
EST:     TTTTCTCTGCCACTGATGCCAAGAGATACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|31466112|gb|CD408140.1|CD408140
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|151394316|gb|EV264187.1|EV264187
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|38192130|gb|CF921336.1|CF921336
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|16343679|gb|BI969274.1|BI969274
EST:     TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|192312257|gb|FK003950.1|FK003950
EST:     TTTTCTCTGCCACTGATGCCAAAAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|6726492|gb|AW310846.1|AW310846
EST:     TTTTCTCTGCCATTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCT                         ATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT
EST: gi|12771996|gb|BG236923.1|BG236923
EST:     GTTTCTGTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTCCCT                         ATTTTGGCTCCACTTCCCATCGGATGTGCTGTGTTCTTGGTCCACTTGGCT
genomic: TTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctata ... ataattgtagATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctatactctttccttttccccactacaatattgcattcattccattaatttggcttataaatgagtatatattctgactttgttattaatgtggttaatttatgatggtatgatataataattgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA