Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGCTTGAGTACCACCTCCTGACTTTGGTTTGCCACTTCCTGATCCTTGCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgttaatactgtaatttgttttgcttctctgatattcgatctgttagttgattaaattgcttgttttgcttttgattag

Basic information

species Glycine max
transcript GLYMA05G37300.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37300.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g12650.1 (Oryza sativa), 5'ss of exon 2
AATTGCTTGAGTACCACCTCCTGACTTTGGTTTGCCACTTCCTGATCCTTGCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagt--------gttaatactgtaatttgtttt-gcttctctgatattcgatc-tgttagttgatta---aattgcttgttttgcttttgattag---------------
|||||||||  ||||||||||||||||| ||||||||    || ||  |  || |||      | ||  | ||||| ||||| ||  | || || |||||||||  |         |   ||    || |||||   | ||     |      ||| ||||       ||   |||| | |     |  | | |   |               
AATTGCTTGGCTACCACCTCCTGACTTTCGTTTGCCATGGGCTCATATTCTCTTTGGGTCTTCTCTTTCTCTGGTCTAATGCCTCATCATTTATTAACAAgtaagattgtttttcatctctatcacaacttgttcaagttttggcaaagcataatcatgttccacaggtagataattacataaaaggtctctaaactgtgccctttctttcag

upper sequence: GLYMA05G37300.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G031308_T02 (Zea mays), 5'ss of exon 2
AATTGCTTGAGTACCACCTCCTGACTTTGGTTTGCCACTTCCTGATCCTTGCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgttaatactgtaatttgttttgcttctctgatattcgatctgttagttgattaaattgcttgttttgcttttgattag--------------------------------------------------
|  |  | |||||||| ||||| || ||||| |||||||  || |||||  | |||||     | ||| ||||||||||||| ||||||||||||||||||| |  |       |||  |||  |  || |    ||| |  ||| ||| |  |  |  |    || || | || ||   |  |                                                   
AGGTCATGGAGTACCATCTCCTCACCTTGGTGTGCCACTGTCTCATCCTCTCGCTGGCCATCCTCTTCCTGTGGTCCAATGCCTCCACTTTCATCAACAAgtgagctt------ctgggattcctgatgttcaaatgaaac-cgaactggttctgaaacagg--gcctgctctgattgccacgacacgagcaaaattttattacttcttcaatttatggcactgctgattttcag

upper sequence: GLYMA05G37300.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0025g00640.t01 (Vitis vinifera), 5'ss of exon 2
AATTGCTTGAGTACCACCTCCTGACTTTGGTTTGCCACTTCCTGATCCTTGCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgttaatactgtaatttgttttgcttctctgatattcgatctgttagttgattaaattgcttgttttgcttttgattag
| |||||||| |||||||| || ||| | || || || | |   || || || |||||    ||||||||||||||||||||| |||| |||||||||||||||  |||| | | |||  |  | ||  ||  | | | ||   || ||||| |    | | |||  | | |||  |  ||    
AGTTGCTTGAATACCACCTGCTAACTCTAGTCTGTCATTGCTCCATACTCGCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgttcagattgttgtgagattctctgatttta-atataatttgttattc---ttagttgagtatattg--tacgacag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208149607|gb|GD948969.1|GD948969
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|17963916|gb|BM270659.1|BM270659
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|192304897|gb|FG996071.1|FG996071
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|151395586|gb|EV265463.1|EV265463
EST:     GCTCTAGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|16995837|gb|BM085209.1|BM085209
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|208028268|gb|GD826303.1|GD826303
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|192298967|gb|FG987712.1|FG987712
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCAT-AACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|298169438|gb|HO020798.1|HO020798
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|208193014|gb|GD988413.1|GD988413
EST:     CTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: CTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|207747049|gb|GD720706.1|GD720706
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTG
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTG
EST: gi|207738118|gb|GD715126.1|GD715126
EST:     GGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|192333652|gb|FK025441.1|FK025441
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGTACATT
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATT
EST: gi|209713300|gb|BW684387.1|BW684387
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|193377372|gb|FK339244.1|FK339244
EST:     CTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: CTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|209713928|gb|BW681933.1|BW681933
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|12774157|gb|BG239084.1|BG239084
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|208145786|gb|GD943145.1|GD943145
EST:     GGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGCCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|213605506|gb|DB968764.1|DB968764
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|213602678|gb|DB956614.1|DB956614
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|193402775|gb|FK365977.1|FK365977
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|26059213|gb|CA802127.1|CA802127
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|163918183|gb|EH039899.1|EH039899
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|19053732|gb|BM732399.1|BM732399
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|193589629|gb|FK544209.1|FK544209
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|38191865|gb|CF921071.1|CF921071
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|193402750|gb|FK367184.1|FK367184
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         A
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattag-
EST: gi|193402750|gb|FK367184.1|FK367184
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         A
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattag-
EST: gi|207760455|gb|GD733596.1|GD733596
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCC
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCC
EST: gi|298182760|gb|HO031495.1|HO031495
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCC
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCC
EST: gi|193524829|gb|FK480110.1|FK480110
EST:     GCTCT-GCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|208314576|gb|GE113912.1|GE113912
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|193316656|gb|FK279026.1|FK279026
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|192330910|gb|FK023097.1|FK023097
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGTACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|298198365|gb|HO039904.1|HO039904
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATT
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATT
EST: gi|192327130|gb|FK015522.1|FK015522
EST:     GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|193653971|gb|FK596959.1|FK596959
EST:     GGGTTGTTCTTGTTGGTTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GGGTTGTTCTTG-TGG-TCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|193534724|gb|FK491198.1|FK491198
EST:     CGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: CGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
EST: gi|192308803|gb|FK000137.1|FK000137
EST:     GCTCTGGCAGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAA                         GAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA
genomic: GCTCTGGCGGGGTTGTTCTTGTGGTCCAATGCATCCACTTTCATCAACAAgtaaagtgtt ... ttttgattagGAGTCCACCAAAGATCCCACAAGTGCACATTCCAGAGGAACCTGTTTTAAA