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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCCTCCACGATACAGAGATTCTGTTCGGGCCATTACTCCGGGGTTGCCCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaattgttaacaattcaacatcttttttctcagttaatttaattaatgaggctgcttgttctggagcccaatttgcattaaattaaggagtaggccatttatatgagtcataactcataatttgttgtggggtttgttcag

Basic information

species Glycine max
transcript GLYMA05G36700.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193362190|gb|FK323978.1|FK323978
EST:     CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193534515|gb|FK491129.1|FK491129
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTCGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|208241728|gb|GE040152.1|GE040152
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|207842143|gb|GD816729.1|GD816729
EST:     CCTTTTCCTTTACTAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCTTTTCCTTTAC-AACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193448309|gb|FK411886.1|FK411886
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|208324224|gb|GE120555.1|GE120555
EST:     CCTTTTCCTTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCTTTTCC-TTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|208117763|gb|GD914645.1|GD914645
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193382250|gb|FK348023.1|FK348023
EST:     CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|208251244|gb|GE045999.1|GE045999
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|254324039|gb|GR840464.1|GR840464
EST:     CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATC-TTGAG                         GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|208162411|gb|GD963142.1|GD963142
EST:     CCC-TTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGAGAGGATAA
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGG-GAGGATAA
EST: gi|192302668|gb|FG996348.1|FG996348
EST:     CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|208142642|gb|GD943998.1|GD943998
EST:     CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|298192580|gb|HO033014.1|HO033014
EST:     CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|254315467|gb|GR825276.1|GR825276
EST:     CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|6454117|gb|AW184865.1|AW184865
EST:     CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|298199163|gb|HO042526.1|HO042526
EST:     CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|208032502|gb|GD828971.1|GD828971
EST:     ATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: ATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|208196852|gb|GD997947.1|GD997947
EST:     CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|208263169|gb|GE064241.1|GE064241
EST:     CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|16105888|gb|BI893628.1|BI893628
EST:     CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|207797893|gb|GD768485.1|GD768485
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|208298239|gb|GE095428.1|GE095428
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193313926|gb|FK282429.1|FK282429
EST:     CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGACATATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193404208|gb|FK367788.1|FK367788
EST:     CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAAGCTTGGGAGGATAA
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATC-AGCTTGGGAGGATAA
EST: gi|208290682|gb|GE082354.1|GE082354
EST:     CCCTTTTCCTTTACAACTATCCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|208319360|gb|GE115929.1|GE115929
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|207707463|gb|GD689271.1|GD689271
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|208341748|gb|GE135440.1|GE135440
EST:     CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGGATAA
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGG-ATAA
EST: gi|193686675|gb|FK626082.1|FK626082
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|298194369|gb|HO041017.1|HO041017
EST:     CCCTTTTCCTTTACAACCATTCTACTCACCAACTTCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193317512|gb|FK285328.1|FK285328
EST:     CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGACATATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193670484|gb|FK611572.1|FK611572
EST:     CCCTTTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|207795128|gb|GD764417.1|GD764417
EST:     CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|193398900|gb|FK362582.1|FK362582
EST:     CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGACATATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|5760821|gb|AI966184.1|AI966184
EST:     CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGNGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG
EST: gi|207752217|gb|GD724546.1|GD724546
EST:     CCC-TTTCCTTTACAACTATTCCACTCACCAACTCCATGGAATCTTTGAG                         GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAG
genomic: CCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaat ... gtttgttcagGCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTGCCTCCACGATACAGAGATTCTGTTCGGGCCATTACTCCGGGGTTGCCCCTTTTCCTTTACAACTATTCTACTCACCAACTTCATGGAATCTTTGAGgtgtgttaattgttaacaattcaacatcttttttctcagttaatttaattaatgaggctgcttgttctggagcccaatttgcattaaattaaggagtaggccatttatatgagtcataactcataatttgttgtggggtttgttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA