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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGgtacgaatccttcaattctcttactttgcttcaaactcacggtactgaaatactattattatcagctttactgcgcctgaaatgaatatgcttctttctc...

Basic information

species Glycine max
transcript GLYMA05G34790.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34790.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G023289_T03 (Zea mays), 5'ss of exon 2
GTGAAAGTGTTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGgta-cgaatccttcaattctcttactttgcttcaaac-------tcacggtactg-aaatactattattatcagctttactgcgcctgaaatgaatatgcttctttctc
|| |  || |||  ||| |||||||| || || |||||||| |||||||||||||||||  |  |||  ||  |||| | ||||| |  |    |||  |         || |||||||        || | ||| | ||    || ||| |     | |  |||   |   ||| |||||          
GTTACTGTATTCCAGCAGCCTCATTATCTGCAGAACTTTGTCCAGTCAACATTCAATGCCCTTCCTGCAGACCAAGTAAAAGgtaacctacttatcagattatcagtcctgtttcaaacaaggtttccaggataccgcaaggtttagtataaattattattgtgcagttttcatgtatatgt---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254347113|gb|GR856783.1|GR856783
EST:     TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAG                         GTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
genomic: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGgtacgaatcc ... attcttgtagGTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
EST: gi|193510090|gb|FK472090.1|FK472090
EST:     TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAG                         GTGCAACGCTTGTTGTATCTGGTGA
genomic: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGgtacgaatcc ... attcttgtagGTGCAACGCTAGTTGTATCTGGTGA
EST: gi|151396774|gb|EV266647.1|EV266647
EST:     TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAG                         GTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
genomic: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGgtacgaatcc ... attcttgtagGTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
EST: gi|209696727|gb|BW672906.1|BW672906
EST:     TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAG                         GTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
genomic: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGgtacgaatcc ... attcttgtagGTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
EST: gi|193671948|gb|FK616274.1|FK616274
EST:     TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAG                         GTGCAACGCTTGTTGTATCTGGTGATGG
genomic: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGgtacgaatcc ... attcttgtagGTGCAACGCTAGTTGTATCTGGTGATGG
EST: gi|213611739|gb|DB958861.1|DB958861
EST:     TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAG                         GTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
genomic: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGgtacgaatcc ... attcttgtagGTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
EST: gi|213617812|gb|DB967258.1|DB967258
EST:     TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAG                         GTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
genomic: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGgtacgaatcc ... attcttgtagGTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
EST: gi|7146923|gb|AW508845.1|AW508845
EST:     AAAAAGTTAGAG                         GTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
genomic: AAAAAGTTAGAGgtacgaatcc ... attcttgtagGTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
EST: gi|193681003|gb|FK622851.1|FK622851
EST:     TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAG                         GTGCAACGCTTGTTGTATCTGGTGAT
genomic: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGgtacgaatcc ... attcttgtagGTGCAACGCTAGTTGTATCTGGTGAT
EST: gi|213605046|gb|DB956379.1|DB956379
EST:     TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAG                         GTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
genomic: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGgtacgaatcc ... attcttgtagGTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
EST: gi|15285957|gb|BI469848.1|BI469848
EST:     TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAG                         GTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
genomic: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGgtacgaatcc ... attcttgtagGTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
EST: gi|6070595|gb|AW099982.1|AW099982
EST:     TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAG                         GTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAAGGAAGCT
genomic: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGgtacgaatcc ... attcttgtagGTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAA-GGAAGCT
EST: gi|193484433|gb|FK451139.1|FK451139
EST:     TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAG                         GTGCAACGCTAGTTGTATCTGGTGATGG
genomic: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGgtacgaatcc ... attcttgtagGTGCAACGCTAGTTGTATCTGGTGATGG
EST: gi|7684820|gb|AW755468.1|AW755468
EST:     TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAG                         GTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
genomic: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGgtacgaatcc ... attcttgtagGTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA