Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCTTCTCGCCAGAGGCTGCCTGCGACGTCATCGAAGCAGAAAGACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATGgttccttctcccgtttctcctctctttcttttcattctcaaatcacaatgcttggaattgtgtattcatttgatatgagtttgtttccttgtag

Basic information

species Glycine max
transcript GLYMA05G34400.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34400.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G80910.1 (Arabidopsis thaliana), 5'ss of exon 3
AATCTTCTCGCCAGAGGCTGCCTGCGACGTCATCGAAGCAGAAAGACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATGgttccttctc-ccgtttctcctctctttcttttcattctcaaatcacaatgcttggaattgtgtattcatttgatatgagtttgtttccttgtag
| | ||||| || ||||| || || || || || |||||||| |||||||| ||||||||||| |||||||| |||||||||||||| |||||||| |    |   |   |||      | | ||  || |       |||  || |   |    |  |   |    |  |   |||      | ||||
ACTTTTCTCCCCGGAGGCAGCTTGTGAGGTAATTGAAGCAGAGAGACATTCCCATGTTTTCTATGAGGCCGAGCCCGATATCTGGATGGTCATGgtacaacattatcaactctttcacttgttttagcaattgatttgcactttgttcatatgcataaaaagaacaaaatttgatttagactttggtag

upper sequence: GLYMA05G34400.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G16020.2 (Arabidopsis thaliana), 5'ss of exon 3
AATCTTCTCGCCAGAGGCTGCCTGCGACGTCATCGAAGCAGAAAGACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATGgtt---ccttctcccgtttctcctctctttcttttca---ttctcaaatcacaatgcttggaattgtgtatt--catttgatatgagtttgtttccttgtag----------
| | ||||| || ||||| || || || || |||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||| || |||||    | || ||    || || | | ||      ||   || || |   |  |||| |   || |||| ||  || |  | || |    | |    | ||           
ACTTTTCTCTCCGGAGGCGGCTTGTGAAGTGATCGAAGCAGAAAGACATTCCCATGTTTTCTATGAGGCTGAACCTGATATCTGGATGGTTATGgtaaggcattgtcttacttttcttttgttatagcacaatgttttctatgaatgatgcatcctatggtgtcttagcaatgtaaataaacaagatctgatctatacattggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298197699|gb|HO045178.1|HO045178
EST:     GACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATG                         GTTGCCGACAAAAGCAATGATTCAGAACCTATATGGAGAGTTGATGCATTA
genomic: GACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATGgttccttctc ... ttccttgtagGTTGCCGACAAAAGCAATGATTCAGAACCTATATGGAGAGTTGATGCATTA
EST: gi|6482462|gb|AW201719.1|AW201719
EST:     GACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATG                         GTTGCCGACAAAAGCAATGATTCAGAACCTATATGGAGAGTTGATGCATTA
genomic: GACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATGgttccttctc ... ttccttgtagGTTGCCGACAAAAGCAATGATTCAGAACCTATATGGAGAGTTGATGCATTA
EST: gi|298178758|gb|HO024493.1|HO024493
EST:     GACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATG                         GTTGCCGACAAAAGCAATGATTCAGAACCTATATGGAGAGTTGATGCATTA
genomic: GACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATGgttccttctc ... ttccttgtagGTTGCCGACAAAAGCAATGATTCAGAACCTATATGGAGAGTTGATGCATTA
EST: gi|298196439|gb|HO041182.1|HO041182
EST:     GACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATG                         GTTGCCGACAAAAGCAATGACTCAGAACCTATACGGAGAGTTGATGCATTA
genomic: GACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATGgttccttctc ... ttccttgtagGTTGCCGACAAAAGCAATGATTCAGAACCTATATGGAGAGTTGATGCATTA
EST: gi|18735130|gb|BM528581.1|BM528581
EST:     GACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATG                         GTTGCCGACAAAAGCAATGATTCAGAACCTATATGGAGAGTTGATGCATTA
genomic: GACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATGgttccttctc ... ttccttgtagGTTGCCGACAAAAGCAATGATTCAGAACCTATATGGAGAGTTGATGCATTA
EST: gi|298194957|gb|HO043429.1|HO043429
EST:     GACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGCCATG                         GTTGCCGACAAAAGCAATGATTCAGAACCTACATGGAGAGTTGATGCATTA
genomic: GACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATGgttccttctc ... ttccttgtagGTTGCCGACAAAAGCAATGATTCAGAACCTATATGGAGAGTTGATGCATTA
EST: gi|298185750|gb|HO028061.1|HO028061
EST:     GACATTCTCATGTTTTCTACGAGGCCGAACCAGATATCTGGATAGTCATG                         GTTGCCGACAAAAGCAATAATTCAGAACCTATATGGAGAGTTGATGCATTA
genomic: GACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATGgttccttctc ... ttccttgtagGTTGCCGACAAAAGCAATGATTCAGAACCTATATGGAGAGTTGATGCATTA