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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTCCATCAAGTAATCAAGGCAAATGACGATCTTACTCCTGAGCACCATCAGTTTTTCTTGTACCAACTTCTTAGGGGCCTGAAATATATACATACAGgtattgtatccttattatgacaaggtccttccttgacttttttagatagtgatattaaactagtatatcatttttcttgcag

Basic information

species Glycine max
transcript GLYMA05G33980.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g50120.1 (Oryza sativa), 5'ss of exon 2
GACCTCCATCAAGTAATCAAGGCAAATGACGATCTTACTCCTGAGCACCATCAGTTTTTCTTGTACCAACTTCTTAGGGGCCTGAAATATATACATACAGgtattgtat-ccttattatgacaaggtccttccttgacttttttagatagtgatattaaactagtatatcatttttctt-gcag
|| |||||||| ||||| || |||||||| ||||| || || ||||| || |||||||||||||| || || ||  ||||  |||| || || ||| |||||| |  || || |||  |   ||     |   ||   ||  |||  | ||   |       | | | |  ||| |||| ||||
GATCTCCATCAGGTAATAAAAGCAAATGATGATCTCACACCAGAGCATCACCAGTTTTTCTTGTATCAGCTGCTCCGGGGAATGAAGTACATTCATGCAGgtagtagattccatatagtaggaaatcggtaatttcttttgcttatgtggttg-acacgctcactttctggtttctctttgcag

upper sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G73670.1 (Arabidopsis thaliana), 5'ss of exon 2
GACCTCCATCAAGTAATCAAGGCAAATGACGATCTTACTCCTGAGCACCATCAGTTTTTCTTGTACCAACTTCTTAGGGGCCTGAAATATATACATACAGgtattgtatccttattatgacaaggtccttccttgacttttttagatagtgatattaaactagtatatcatttttc--ttgcag
|| || ||||| || || || || ||||| ||| | ||||||||||| ||||||||||||||||| || |||||| | ||  |||| ||| | ||| | ||| | || ||   |   |  |     | |   ||  | || | | |||  | |||| ||    ||  ||  | ||   ||||||
GATCTTCATCAGGTTATTAAAGCTAATGATGATTTAACTCCTGAGCATCATCAGTTTTTCTTGTATCAGCTTCTTCGTGGTTTGAAGTATGTTCATGCTGgt-tagtttctaaacagtctctttcacttgtgttatcattatgatataaggttattgaagagctacgtctctgtttgtttgcag

upper sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 3
GACCTCCATCAAGTAATCAAGGCAAATGACGATCTTACTCCTGAGCACCATCAGTTTTTCTTGTACCAACTTCTTAGGGGCCTGAAATATATACATACAGgtattgtatccttattatgacaaggtccttccttgac--------ttttttagatag-tgatattaaactagtatatcatttttc--ttgcag
|| || |||||||| |||||||| ||||| ||| | |||||||||||  ||||||||||||||||||| |||||| | || ||||||||| | ||  ||||| | || ||    ||   |||  |  ||   | ||         |||||   |||| | ||||| ||  | |  |   || |    || |||
GATCTTCATCAAGTGATCAAGGCGAATGATGATTTGACTCCTGAGCATTATCAGTTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATGTTCACGCAGgt-tagtttctggttttacacattggtctctttcgatcctcatgatttttgttatagataatattgaaacacttaagggttctctgttttcag

upper sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv17s0000g02570.t01 (Vitis vinifera), 5'ss of exon 2
GACCTCCATCAAGTAATCAAGGCAAATGACGATCTTACTCCTGAGCACCATCAGTTTTTCTTGTACCAACTTCTTAGGGGCCTGAAATATATACATACAGgt-attgtatcct-----tattatgacaaggtccttccttgacttttttagat--agtgatattaaactagtatatcatt-tttcttgcag
|| || ||||||||||| |||||||| || ||||||||||| |||||| |||| |||||||||||||| |||||| |||| || ||||||||||||||||||   ||  |        ||||||  |     | ||  ||  ||||| |      | ||      ||  |  || | ||  |||||| |||
GATCTTCATCAAGTAATTAAGGCAAACGATGATCTTACTCCCGAGCACTATCAATTTTTCTTGTACCAGCTTCTTCGGGGTCTAAAATATATACATACAGgttggtgcttttcagagatattatagcctcaccgtttgtttgcttttatgtcctgaatggccactaataaaaattttatggtttcttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306378|gb|FG996138.1|FG996138
EST:     TCAGTTTTTCTTGTGCCAACTTCTTAGGGGCCTGAAATATATACATACAG                         CAAATGTGTTTCATCGTGATTTGAAGCCAAAAAACATTCTTGCTAACGCTG
genomic: TCAGTTTTTCTTGTACCAACTTCTTAGGGGCCTGAAATATATACATACAGgtattgtatc ... tttcttgcagCAAATGTGTTTCATCGTGATTTGAAGCCAAAAAACATTCTTGCTAACGCTG
EST: gi|5175437|gb|AI759770.1|AI759770
EST:     TCAGTTTTTCTTGTACCAACTTCTTAGGGGCCTGAAATATATACATACAG                         CAAATGTGTTTCATCGTGATTTGAAGCCAAAAAACATTCTTGCTAACGCTG
genomic: TCAGTTTTTCTTGTACCAACTTCTTAGGGGCCTGAAATATATACATACAGgtattgtatc ... tttcttgcagCAAATGTGTTTCATCGTGATTTGAAGCCAAAAAACATTCTTGCTAACGCTG