Sequence
atgc intronic sequence ATGC exonic sequenceATGAAGAGGTAGCTGCTGTGCAAGAGCAAGTAAGGCAGATAAAGGCACAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTTCACAGAAAAAACAGgcatgtttttaatgtgtttgtgtgtgtatgctgatctaagctatattcactagtcatggtatttattggttaagtatacttctccaataaacatgcttac...
Basic information
species | Glycine max |
transcript | GLYMA05G33560.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g51020.1 (Oryza sativa), 5'ss of exon 2
ATGAAGAGGTAGCTGCTGTGCAAGAGCAAGTAAGGCAGATAAAGGCACAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTTCACAGAAAAAACAGgcatgtttttaatg-----tgtttgtgtgtgtatgctgatctaagctatattcactagtcatggtatttattg----gttaagtatacttctccaataaacatgcttac-------------------------------------------------
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ATGAGGAAGCAGCAGCATTGCAAGAGCAAGTAAGGCAGATAAAGGCCCAGGAAGAAGAATTTGAAACTTTTAATCTAAAGATTGTGCATAGAAAAAACAGgtgctctttttctggtccttaattacttggcatttctttattagttcatttgtattaaa-atgatacttggtatcatgcttggtgt-ttgcgtttgttaatttgtttatctctaacgatattttttaactccattatatcctgctgacaatataacag
upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G015073_T01 (Zea mays), 5'ss of exon 2
ATGAAGAGGTAGCTGCTGTGCAAGAGCAAGTAAGGCAGATAAAGGCACAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTTCACAGAAAAAACAGgca-tgtttttaatgtgtttgtgtgtgtatgctgatc----taagctatattcactagtcatggtatttattggttaagtatacttctccaataaacatgcttac--------------------------------------------------------------------
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ATGAGGAAGCAGCAGCGTTGCAAGAGCAAGTCAGGCAGATAAAGGCGCAGGAGGAAGAGTTTGAAACGTTCAATCTTAAGATTGTGCATAGAAAAAACAGgtaatgcatttaa-atgtttgtcc-catattttaatcttactaaagcataaaaaatgat-gtggtgattttcagttatctattgtccttgtgtgcctgtgttcacagtgtggcacttaaacctttttataaagtattttgtgtattctaacattatctcctattaattatcag
upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 2
ATGAAGAGGTAGCTGCTGTGCAAGAGCAAGTAAGGCAGATAAAGGCACAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTTCACAGAAAAAACAGgcatgtttttaatgtgtttgtgtgtgtatgctgatct----aagctatattcactagtcatggtatttattggttaagtatacttctccaataaacatgcttac-----------------------------------------------------------------------
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ATGAGGAAGCAGCAGCATTGCAAGAGCAAGTCAGGCAGATAAAGGTGCAGGAGGAAGAGTTTGAAACTTTCAATCTTAAGATTGTGCATAGAAAAAACAGgtattttctttaaatgattgt-tccatctgttaatcttgttaaagcataaaaaaatgatatggtaatttccagttatctattgtccttgtgtgcctgtgttcacagtgtggcacctacgccgtatttttaaaagatattttatatcttctaacaccgtctcctgttaattaacag
upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 3
ATGAAGAGGTAGCTGCTGTGCAAGAGCAAGTAAGGCAGATAAAGGCACAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTTCACAGAAAAAACAGgcatgtttt-taatgtgtttgtgtgtgtatgctgatctaagctatattcactagtcatggtatttattggttaagtatacttctccaataaacatgcttac----------------------------------------------
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ATGAGGATGCCATCGTGGTCCAAGAGCAAGTAAGACAGATTCAAGCCCAAGAGCAGGATTTTGAGACCTTCAACCTGAAGATTGTTCACAGGAAAAATAGgtctgttcccttacaatatcgtg-gtttattatgtattaaatgatgtttcgtacacattttgtttagaagggggatgaagtctgtcccgaatcttgtgaaccctcaggaaatttatttgtttcttctatttgtcttctgttgcccag
upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 2
ATGAAGAGGTAGCTGCTGTGCAAGAGCAAGTAAGGCAGATAAAGGCACAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTTCACAGAAAAAACAGgcatg-tttttaatgtgtttgtgtg-tgtatgctgatctaagctatattcactagtcatggtatttattggttaagtatacttctccaataaacatgcttac-
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ATGAAGAGGCAGTGGCTGTCCAAGAGCAAGTTAGACAAATTAAGGCCCAAGAGGAGGAGTTTGAAACCTTTGACCTCAAAATTGTGCATCGAAAAAACAGgtaagatttctccccaacttttatggtttaaactaaaacagatagaaagta--agtaagaagttaccttgtttaaaagagcatctgtctctga-gtctctact
upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 8
ATGAAGAGGTAGCTGCTGTGCAAGAGCAAGTAAGGCAGATAAAGGCACAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTTCACAGAAAAAACAGgcatgtttttaatgtgtttgtgtgtgtatgctgatctaagctat--attcactagtcatggtatttattggttaagtatacttctccaa---taaacatgcttac--
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ATGAAGAAGCAGCTGCTGTGCAAGAGCAAGTAAGGCAGATAAAAGCTCAGGAGGAGGAATTTGAGACCTTCAATCTCAAAATTGTGCATAGGAAAAACAGgcatgtctcccct-------catctgaaaaatcttttaaactattaaataactcatcctagttctttgcaggctaatattccattttgaagttacagctgctatcatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192295803|gb|FG992614.1|FG992614EST: GAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTTCACAGAAAAAACAG AACTGGCTTTGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTAAT
genomic: GAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTTCACAGAAAAAACAGgcatgttttt ... tgttgctcagAACTGGCTTTGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGAAGAGGTAGCTGCTGTGCAAGAGCAAGTAAGGCAGATAAAGGCACAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTTCACAGAAAAAACAGgcatgtttttaatgtgtttgtgtgtgtatgctgatctaagctatattcactagtcatggtatttattggttaagtatacttctccaataaacatgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA