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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACCGGACAGAGGGGGCTGATCACTTCTTTGTGGTTCCTCATGACTTTGGGGCATGTTTCCATTACCAGgtacaagatttttcacatatcactgttagttttacttaagtatttgaaccaattatatgctgtcttgagaagtaacaaagaaaagcagtttagatgtaggatacctatccaaaagtaacacataacatgcattttattcattattttgttctag

Basic information

species Glycine max
transcript GLYMA05G33420.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33420.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G056702_T01 (Zea mays), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACCGGACAGAGGGGGCTGATCACTTCTTTGTGGTTCCTCATGACTTTGGGGCATGTTTCCATTACCAGgtaca----agatttttcacatatca----ctgttagttttact-taagt---atttgaaccaattatatgctgtcttgagaagtaacaaaga--aaagcagtttagatgtaggatacctatccaaaagtaacacataacatgca-ttttattcattat----tttgttctag
 ||| | |||||       ||||| || |||||| |||||||||| || || ||||||||||| || || ||||||||||| ||||| ||||| ||||||||       |||    | ||| | ||    |  | || | ||||   |||    | || |   |   ||  |||       |  ||||  ||    ||    ||      |   || | | |       ||  ||    | |  | | |   |||  |      ||||||   
TCAGTTCATTTCCAACCGGTGGCCATACTGGAACAGGACAGAGGGAGCAGACCACTTCTTTGTCGTGCCACATGACTTTGGCGCATGCTTCCACTACCAGgtgagttgtagagccataacaaaccatgaaccatcagatgtactgccagtgcagtgtggaatgaacctagcctggaaactcatataacggagtttgaaatctttctatcattctattcatgtttgctcataggaccattcgtctaatgtcgctcagcacacccattgttcag-

upper sequence: GLYMA05G33420.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G000581_T01 (Zea mays), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACCGGACAGAGGGGGCTGATCACTTCTTTGTGGTTCCTCATGACTTTGGGGCATGTTTCCATTACCAGgtacaagatttttcacatatcactgttagttttacttaagtatttgaaccaattatatgctgtcttgagaagtaacaaagaaaagcagtttagatgtaggatacctatccaaaagtaacacataacatgcattttattcattattttgttctag
  |||| ||| |  | ||||||||||| |||||| |  ||||||| || ||||| ||||||||    || ||||||||||| || || |||||||| |||||||||          | | ||| | ||   | |  ||  | |      || |||| |  ||  |  |  | |||           ||||||||||      |   ||  |  ||||    ||                               
TGAGCTGATTGCCACGAACTGGCCTTACTGGAACAGATCAGAGGGTGCAGATCATTTCTTTGTCACGCCACATGACTTTGGTGCTTGCTTCCATTATCAGgtacaa----------acaccaccggta-catgaagtagctgtagcgtgcatttatcta-tgcttccattaataa-----------agtttagatgctaatcaataatagatgagtattgaat-------------------------------

upper sequence: GLYMA05G33420.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G61840.1 (Arabidopsis thaliana), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACCGGACAGAGGGGGCTGATCACTTCTTTGTGGTTCCTCATGACTTTGGGGCATGTTTCCATTACCAGgtacaagatttttcacatatcactgttagttttacttaagtatttgaaccaattatatgctgtcttgagaagtaacaaagaaaagcagtttagatg-taggatacctatccaaaagtaacacataacatgcattttattcattattttgttctag
 ||||||||| |||| || ||||| || ||||| || ||||| || || || ||||||||||| || |||||||||||||| || ||||||||||| || ||| || | |     | | || | ||   |||| |||   |||   ||  |    | ||||  |||||  | ||       | |  | | || ||| | |  | |                                                  
TCAGCTTATTGCTTCCAATTGGCCATACTGGAATCGCACAGAAGGAGCAGACCACTTCTTTGTTGTGCCTCATGACTTTGGAGCCTGTTTCCATTATCAAgta-aacaatagaatcttttctcagtctctttttctttc-tatcctaagtaggctt-tgcttgcttgatcaatacttc--tacactattctaaatgatggtgtgc--------------------------------------------------

upper sequence: GLYMA05G33420.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0150g00180.t01 (Vitis vinifera), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACCGGACAGAGGGGGCTGATCACTTCTTTGTGGTTCCTCATGACTTTGGGGCATGTTTCCATTACCAGgtacaa-----gatttttcacatatcactgttagttttacttaagtatttgaaccaattatatgctg-tcttgagaagtaacaaagaaaagcagtttagatgtaggatacctatccaaaagtaacacataacatgcattttattcattattttgttctag
|||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| || |||||||||||||| || || || |||||||| |||  |     |  || | |||||  | |     ||||  | ||    | | ||   ||||||  || | |||  | |  ||| | ||  ||  | | |   |                                                         
ACAGCTCATTTCTTCAAACTGGCCTTACTGGAATCGGACAGAAGGGGCTGATCACTTCTTTGTTGTGCCTCATGACTTTGGAGCCTGCTTTCATTACCAAgtaagaccctcgtattcttacatactagttaggatttttttcaaaatctagtac---ttatatcttgatattggtatgctacatacaat-gctttcttgtcctg--------------------------------------------------------

upper sequence: GLYMA05G33420.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv17s0000g00120.t01 (Vitis vinifera), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACCGGACAGAGGGGGCTGATCACTTCTTTGTGGTTCCTCATGACTTTGGGGCATGTTTCCATTACCAGgtacaagattt----ttcacatatcact-gttagttttacttaagtatttgaaccaattatatgctgtcttgagaagt--aacaaagaaaagcagtttagatgtaggatacctatccaaaagtaacacataacatgcattttattcattattttgttctag-----------------------------
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||| || || |||||||||||||| || ||||||||||| |||  | | ||    |||   | ||||    || |    |  |   ||| |     ||  | ||||    || |   |  ||| ||      ||| ||   | |   | |     |      ||     |    | |  |  | ||||||||   ||  |                              
ACAGCTTATCTCTTCAAACTGGCCTTATTGGAATCGGACAGAAGGGGCTGATCACTTTTTTGTAGTGCCCCATGACTTTGGGGCGTGCTTCCATTACCAAgtaagaaacttcaatttcttttgtcacccagtactcccccacattcattcgtttggatagtctgcttgaatgtgctcttgaaccaactggcccagatttagtttttcagagaggcctctggctagtgtcttttcttc-ctaaactcattattcactttcactgggcctctgttcatgtccattataacag

upper sequence: GLYMA05G33420.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ05285 (Selaginella moellendorffii), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACCGGACAGAGGGGGCTGATCACTTCTTTGTGGTTCCTCATGACTTTGGGGCATGTTTCCATTACCAGgtaca---agatttttcacatatcactgttagttttacttaagtatttgaaccaattatatgctgtcttgagaagtaacaaagaaaagcagtttagatgtaggatacctatccaaaagtaacacataacatgcattttattcattattttgttctag
 ||    |||||     | |||||||| ||||||||||| ||||| |||||||| || || || |||||||| |||||||| || || || || ||||||||        |||||  | | |||  | ||   ||   |||||| |   |||       |  ||   ||  |   |               || | || |  |                                                      
CCAATACATTTCGAATCAGTGGCCTTACTGGAACCGGACGGAGGGTGCTGATCATTTTTTCGTTGTTCCTCACGACTTTGGAGCTTGCTTTCACTACCAGgttggtttgaattttctatacatctttctt---ttgctttaagtctactaactcgcgtcactcttctttttggctttttcttttt---tctttgaaattttag------------------------------------------------------

upper sequence: GLYMA05G33420.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ25836 (Selaginella moellendorffii), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACCGGACAGAGGGGGCTGATCACTTCTTTGTGGTTCCTCATGACTTTGGGGCATGTTTCCATTACCAGgtac-----aagatttttcacatatcactgttagttttacttaagtatttgaaccaattatatgctgtcttgagaagtaacaaagaaaagcagtttagatgtaggatacctatccaaaagtaacacataacatgcattttattcattattttgttctag
 ||    |||||     | ||||| || ||||||||||| ||||| |||||||| || || || |||||||| |||||||| || || || || ||||||||       ||  || ||  ||| |  || ||  ||| | |  | ||  |   |  | | |    | || |     |             |  |  |  | |||                                                       
CCAATACATTTCGAATCAGTGGCCGTACTGGAACCGGACGGAGGGTGCTGATCATTTTTTCGTTGTTCCTCACGACTTTGGAGCTTGCTTTCACTACCAGgttggtttgaattttctttccatctttcttttgctttaagtctactaactcgcctcactcttctttttcctcgttggctttttcctttttctttgaaattttag-------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13312605|gb|BG406256.1|BG406256
EST:     ATCACTTCTTTGTGGTTCCTCATGACTTTGGGGCATGTTTCCATTACCAG                         GAAGAGAAGGCAATTGAAAGAGGGATTCTTACACTACTACGGCGTGCTACC
genomic: ATCACTTCTTTGTGGTTCCTCATGACTTTGGGGCATGTTTCCATTACCAGgtacaagatt ... tttgttctagGAAGAGAAGGCAATTGAAAGAGGGATTCTTACACTACTACGGCGTGCTACC