1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAGGTGAAATTCCGTTTTCCAGTCCTTGTGTTGTGGGGCATGAGATTACCGGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagttattggcaatgtgatttctgtgtcatgatgttctacttaacgaaaatataatttcattctagataatgaccagtaggaatgacaattttgcttctctgcgtttcag
species | Glycine max |
transcript | GLYMA05G33140.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAAEST: gi|14258428|gb|BG881336.1|BG881336
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgcgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAAEST: gi|209704779|gb|BW673431.1|BW673431
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgcgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAAEST: gi|213608120|gb|DB970801.1|DB970801
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgcgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAAEST: gi|208192364|gb|GD993740.1|GD993740
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgcgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAAEST: gi|298164571|gb|HO014216.1|HO014216
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgcgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAAEST: gi|151395988|gb|EV265865.1|EV265865
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgcgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: GGTGAGGTTGTTGAACATGGAGCACTAACTGACAGCAAAACCATAGAAAG GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAAEST: gi|209717619|gb|BW679699.1|BW679699
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgcgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgcgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGTGAAATTCCGTTTTCCAGTCCTTGTGTTGTGGGGCATGAGATTACCGGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagttattggcaatgtgatttctgtgtcatgatgttctacttaacgaaaatataatttcattctagataatgaccagtaggaatgacaattttgcttctctgcgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA