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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTGGCTTTGGCGCAGGAAGTCATCTGAGAAAAGTCCAGGTGAAACAGAGAGTTCTGGTTCAATTTCATCTCTTTCAGAAAGATTCTCTGATGAACAGgtgggcattggaatggaagtggtatcagtgtgtttaaattgaaagtgttttaccattttgattgcacagattgttatgtgctttttaggcttaataacac...

Basic information

species Glycine max
transcript GLYMA05G32920.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32920.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G05270.1 (Arabidopsis thaliana), 5'ss of exon 2
GAGTTGGCTTTGGCGCAGGAAGTCATCTGAGAAAAGTCCAGGTGAAACAGAGAGTTCTGGTTCAATTTCATCTCTTTCAGAAAGATTCTCTGATGAACAGgtggg----cattggaatggaa--gtggtatcagtgtgtttaaattgaaagtgt----tttaccattttgattgcacagattg-ttatgtgctttttaggcttaataacac
||| ||| | ||||| || |||||||||||||||||||| || ||||| |||||| |||| ||  | || ||||  || |||||||||||||| || |||||         ||| ||||     |||  || | |||| ||    |||||   |    || | |||||||||||      ||| || |||  ||| |  |   ||   || 
GAGCTGGTTATGGCGGAGAAAGTCATCTGAGAAAAGTCCCGGCGAAACTGAGAGTACTGGCTCTGTCTCTTCTCACTCTGAAAGATTCTCTGACGATCAGgttacacttttttgcaatgcctttgtgacatta-tgtgattgtggtgaaatcttggaattaatcattttgattgtgttatttggttttgtaatttgtgtgtgaaacttcag

upper sequence: GLYMA05G32920.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0031g02720.t01 (Vitis vinifera), 5'ss of exon 4
GAGTTGGCTTTGGCGCAGGAAGTCATCTGAGAAAAGTCCAGGTGAAACAGAGAGTTCTGGTTCAATTTCATCTCTTTCAGAAAGATTCTCTGATGAACAGgtgggca---ttggaatggaagtggtatcagtgtgtttaaattgaaagtgttttaccattttgattgcacagattgttatgtgctt-tttaggcttaataacac
||||||||| ||| | || ||||| |||||||| || || || ||||| || || || || |||||||| |||| ||| ||| ||||||||||||| |||||  |     ||  | | |   ||| |  ||| |||||   |||    |    ||   | ||| ||     || |   ||    || |||   ||   | |   
GAGTTGGCTGTGGAGGAGAAAGTCTTCTGAGAAGAGCCCTGGAGAAACTGAAAGCTCCGGATCAATTTCTTCTCATTCTGAACGATTCTCTGATGATCAGgtaagtgctcttcaatttgtgttggcaaaagt-tgttttctttgccttttgactaaggtcttggtttgtatgactagaatacaattattttcactgcttga---