1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTTTTCGCTTCGGGAGAAAATGGCGGCAATGGAGGTGTTCTGGAGGAGATATCTGAAGCCGAAAAGGAGCCTACGAATTTTGCGTGGCCGGATAACAAGgttttcgaatagttacagtttctcttttggatatcggatctatttgcatgcgtgattggcctggggaacctgcgttccaggttgtgtttgaaatttcatcatggaattcacaggaaaagaattatttgattgcag
species | Glycine max |
transcript | GLYMA05G32900.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TATCTGAAGCCGAAAAGGAGCCTACGAATTTTGCGTGGCCGGATAACAAG AAACCTAGGGTTTGCATATTAGGCGGTEST: gi|5606310|gb|AI900399.1|AI900399
genomic: TATCTGAAGCCGAAAAGGAGCCTACGAATTTTGCGTGGCCGGATAACAAGgttttcgaat ... ttgattgcagAAACCTAGGGTTTGCATATTAGGCGGT
EST: TATCTGAAGCCGAAAAGGAGCCTACGAATTCTGCGTGGCCGGATAACAAG AAACCTATG-TTTGCATATTAGGCGGAGGATTTGGGGGCTTATATACTGCTEST: gi|213607376|gb|DB967085.1|DB967085
genomic: TATCTGAAGCCGAAAAGGAGCCTACGAATTTTGCGTGGCCGGATAACAAGgttttcgaat ... ttgattgcagAAACCTAGGGTTTGCATATTAGGCGGTGGATTTGGGGGCTTATATACTGCT
EST: TATCTGAAGCCGAAAAGGAGCCTACGAATTTTGCGTGGCCGGATAACAAG AAACCTAGGGTTTGCATATTAGGCGGTGGATTTGGGGGCTTATATACTGCT
genomic: TATCTGAAGCCGAAAAGGAGCCTACGAATTTTGCGTGGCCGGATAACAAGgttttcgaat ... ttgattgcagAAACCTAGGGTTTGCATATTAGGCGGTGGATTTGGGGGCTTATATACTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTTCGCTTCGGGAGAAAATGGCGGCAATGGAGGTGTTCTGGAGGAGATATCTGAAGCCGAAAAGGAGCCTACGAATTTTGCGTGGCCGGATAACAAGgttttcgaatagttacagtttctcttttggatatcggatctatttgcatgcgtgattggcctggggaacctgcgttccaggttgtgtttgaaatttcatcatggaattcacaggaaaagaattatttgattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG