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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatctgtcttgattcattcttttataatcacatcattctttccctgaatcaattcctttcaaaacag

Basic information

species Glycine max
transcript GLYMA05G32220.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 3
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatctgtcttgattcattcttttataatcacatcattctttccctgaatcaattcctttcaaaacag
|| ||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||||||||| || |||||| ||||||||||||| || |||||||||      || ||   ||  | || || |   ||||| ||     ||| | | | | ||||    || || |  |  |||
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgta-----ataactcactcacatggttgagagttttaaaaaatattcactttattcatgaactg-ttgctcttgatgcag

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g36290.2 (Oryza sativa), 5'ss of exon 3
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatctgtcttgattcattcttttataatcacatcattctttccctgaatcaattcctttcaaaacag
|| |||||||| || |||||||||||||||||||||   || || |||||||| || |||||||||||||| ||||||||||| || ||||| ||||||||| ||  ||||||| | ||   |   || |   || | | |||     ||      | |   || ||| |||     |||
GAGAAGATGACACAGATCATGTTTGAGACCTTCAATTGCCCAGCAATGTATGTCGCAATCCAGGCTGTTCTATCCTTGTATGCTAGCGGTCGAACAACTGgtatgattattacc-tttgcaatagatcgtg--ttaaaattcaatgtgttggggggcagtgacacttcttttatctgcag

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g61970.1 (Oryza sativa), 5'ss of exon 3
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtat--attaccatctgtcttgattcattcttt-tataatcacatcattctttccctga-atcaattcctttcaaaacag---------
|| || ||||||||||||||||||||||| |||||||  || || ||||||||||| || || |||||||| ||  | |||||||||||||| ||||| ||  ||| |  |||  |  || |    | | | ||||| || | | |||||  |   |   ||| || |   |  | |      |         
GAGAAAATGACCCAAATCATGTTTGAGACATTCAATGCACCAGCAATGTATGTGGCTATTCAAGCTGTTCTTTCACTATATGCCAGTGGTCGTACAACAGgcatgtgtccattttctactattcaaaatgagtctttgtacacttacatctcttcattggtgatatgaccccagtgcgttgtggcttgtgcag

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g64630.1 (Oryza sativa), 5'ss of exon 3
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatctgtcttgattcattcttttataatcacatcattctttccctgaatcaattcctttcaaaacag----------------------------------------
|| ||||||||||| |||||||| |||||||||||    || || ||||| || ||||||||||| ||||| || ||||| ||||||||||| ||||||||| ||   ||| |  |        |  ||||   || |||      ||| |||  |   ||  ||||  ||| || |                                           
GAGAAGATGACCCAGATCATGTTCGAGACCTTCAACTGCCCAGCGATGTACGTTGCCATCCAGGCCGTTCTTTCGTTGTACGCCAGTGGTCGAACAACTGgtatgatgattgctgtacaaaaaaaaccatttgattttaa------catacttatctaaaaaaaattgattttaatatccaatgagtagtcgaactgcgctaactagtttataaatgcag

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g64630.2 (Oryza sativa), 5'ss of exon 3
-------------------------------------GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatctgtcttgattcattcttttataatcacatcattctttccctgaatcaattcctttcaaaacag
                                     || ||||||||||| |||||||| |||||||||||    || || ||||| || ||||||||||| ||||| || ||||| ||||||||||| ||||||||| ||   ||| |  |        |  ||||   || |||      ||| |||  |   ||  ||||             
GCTGACCGAGGCTCCTATGAACCCCAAGGCAAACAGAGAGAAGATGACCCAGATCATGTTCGAGACCTTCAACTGCCCAGCGATGTACGTTGCCATCCAGgccgttctttcgttgtacgccagtggtcgaacaactggtatgatgattgctgtacaaaaaaaaccatttgattttaa------catacttatctaaaaaaaattga-----------

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 5'ss of exon 3
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatctgtcttgattcattcttttataa----tcacatcattctttccctgaatcaattcctttcaaaacag----------------
|| ||||||||||| || ||||||||||| |||||||| ||||| ||||| || || |||||||| || || ||| | ||||||||||| || || |||||| |||||     ||||| | |   ||  |||  | |  |    |  |   ||| |   | || || |    | |      |                  
GAGAAGATGACCCAGATTATGTTTGAGACTTTCAATGTCCCTGCAATGTACGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTGgtatgtatgaactcatctctgtcttttacttcaatgaggagggtttgctcaattatgcacttgtatgatccacctctgctgccatacacttttttttaat

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g73310.1 (Oryza sativa), 5'ss of exon 3
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatctgtcttgattcattcttttataatcacatcattctttc-cctgaatcaattcctttcaa-aacag-----------------------
|| || ||||| || || ||||||||||| |||||||| |||||||||||||| || ||||| || || || ||  | ||||| ||||| || ||||| ||| |||         | |  ||| | |  ||  |||  |||  | |  ||||||  | |  ||  |||| |||  |  | ||                       
GAGAAAATGACACAGATTATGTTTGAGACGTTCAATGTTCCTGCCATGTATGTTGCAATCCAAGCAGTGCTTTCACTCTATGCTAGTGGCCGAACAACAGgtatgtga-----tgttttacttaacttctttctttccaatttcttggttcttttgcatctatagattcatttagatgagagctcggatgattaagaactattct

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 3
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgt--ttgtatattaccatc-tgtcttgattcattcttttataatcacatcattctttccctga-atcaattcctttcaaaacag
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||| |||| |||||||| || |||||||||  |  |   ||| |||  || |   |||   |      |   || ||  |||  || |    ||  ||| || |     |||
GAGAAGATGACCCAAATCATGTTTGAGACCTTCAATGTTCCTGCCATGTATGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattctttaacatggtgaccaaatttcattaggacttcccaaatttttccatctcaattatggattgctgttccttcag

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G006765_T02 (Zea mays), 5'ss of exon 3
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgt------ttgt--atattaccatctgtcttgattcattcttttataatcacatcattctttccctgaatcaattcctttcaaaacag
|| |||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| || ||| |||| |||||||| || |||||||||      | ||  | ||  | | |    || |||    |||  | |||     |||  |     ||  |   |     |||   |||
GAGAAGATGACCCAAATCATGTTTGAGACTTTCAATGTTCCTGCCATGTATGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTGgtaatgactcgttcacatggcgaccaaatttcattaggacttaca-aattttcccatcttaattatgggttgctgttcatcatt-cag

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G067985_T03 (Zea mays), 5'ss of exon 2
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatctgtcttgattcattcttttataatcacatcattctttccctgaatcaattcctttcaaaacag-----------------------
|| |||||||||||||| ||||||||||| |||||||| |||||||||||||| || ||||| || ||||| ||  | ||||| ||||| || || |||||| || |  | | | |   | |   ||     |  |  | |  |||  ||||  |    ||   ||  |||| |   ||                        
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTTCCTGCCATGTATGTTGCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTGgtatg-acctgatccttcctttactttggcgttgattcagtttcatagttctagctagcaac--atctctttgatcccaatatgctgttgtcaactgtttatc

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G067985_T13 (Zea mays), 5'ss of exon 3
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatctgtcttgattcattcttttataatcacatcattctttccctgaatcaattcctt--tcaaaacag--------------------
|| |||||||||||||| ||||||||||| |||||||| |||||||||||||| || ||||| || || |||||  | ||||| ||||| || || |||||| || |  | | | |   | | | ||     |  |  | |  |||  ||||  |   | ||||  || ||  ||  || |                     
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTTCCTGCCATGTATGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatg-acctgatccttcctttagtttggcgttgattcagtttcatagttctagcta-gcatcatctctttgatcccaatatgctgttgtcaactgtttatc

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G053299_T01 (Zea mays), 5'ss of exon 3
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatctgtcttgattca--ttcttttataatcacatcattctttccctgaatcaatt-cctttcaaaacag----------------------------------
|| |||||||||||||| ||||| ||||| |||||||  || || |||||||| || ||||| ||||| || ||| |||||||||| |||||||| || ||   || |   ||  ||     | ||| |  || || ||  |  || ||  |  ||| |   ||   |   ||  | | ||                                    
GAGAAGATGACCCAAATTATGTTCGAGACATTCAATGCACCAGCAATGTATGTTGCTATCCAAGCTGTCCTTTCCCTGTATGCCAGCGGTCGCACTACAGgcacgtgt-ccactttcacctcttattaaagtttttctaggacaacgtctctgattctcgtcattggtgatctgacgacaccattctactacctatgtctcggtactctgtgtgcag

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G437445_T01 (Zea mays), 5'ss of exon 4
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatctgtcttgattcattcttttataatcacatcattctt-tccctgaatcaattcctttcaaaacag
|| ||||||||||| || ||||| ||||| |||||    || || |||||||||||||||||||| ||||| ||| |||| ||||||||||| ||||| ||| ||| || | | ||      || |||||      ||    | |  | | |  ||  |||    | || ||    |    
GAGAAGATGACCCAGATTATGTTCGAGACATTCAACTGCCCAGCAATGTATGTGGCCATCCAGGCCGTTCTTTCCCTGTACGCCAGTGGTCGAACAACGGgtatgt-tactgc-attaaatctgtttcatatcagcattcaaataatagtgtagtcagtgataggaatctttctgcag---

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G030169_T02 (Zea mays), 5'ss of exon 3
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatctgtcttgattcattcttttataatcacatcattctttccctgaatcaattcctttcaaaacag----------------------
||||||||||| |||||||||||||| ||||||| ||| ||||| |||||||| || || || ||||| || ||| | ||||| ||||| || || ||||||  ||     |  |    || |  || |||  | |  | |||  |  ||  |     |  |  | || |    |  |||                      
GAAAAGATGACACAAATCATGTTTGAAACCTTCAGTGTTCCTGCTATGTATGTTGCTATTCAAGCTGTGCTTTCCCTATATGCTAGTGGCCGTACCACTGgtaagtgatcaaataatcatcat--tttatttgtgtgcattcatcttgttgctctggagtctggaatcttaatcatccagcagaactgaattgaccaatggt

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G082484_T01 (Zea mays), 5'ss of exon 3
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatctgtcttgattcattcttttataatcacatcatt--ctttccctgaatc--aattcctttcaaaacag------------------
||||||||||| |||||||||||||| || |||| ||| ||||| |||||||| || || || ||||| || ||| | ||||| ||||| || || ||||||  ||     |  |     | |  || |||| | || | ||   |  ||  ||   |  |||||  |||    |  |||  ||                  
GAAAAGATGACACAAATCATGTTTGAAACTTTCAGTGTTCCTGCTATGTATGTTGCTATTCAAGCTGTCCTTTCCCTTTATGCTAGTGGCCGTACCACTGgtaagtgatcaaataatcagcat--tttattcatgtacattctttttttttgctgctctggaatcttaatctagtataaactagttgaccaaaggtgaaata

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G110378_T03 (Zea mays), 5'ss of exon 4
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgt---------ttgtatattaccatctgtcttgattcattctttta-taatcacatcattctttccctgaatcaattcctttcaaaacag----------
|| ||||||||||| || ||||| ||||| |||||||| ||||||||||| || || || || || || || ||  | ||||||||||| || || ||||||         || |   ||  | |  || |||||||| | ||| | |  ||  | || || |      |      |  | |||| |             
GAGAAGATGACCCAGATTATGTTCGAGACTTTCAATGTTCCTGCCATGTACGTTGCAATTCAAGCAGTGCTGTCACTCTATGCCAGTGGACGTACTACTGgtatgacctgcttcttcctttactttggtgttgattcagtatttcagttctctgaccagtcctagtaatatctctatggtctcaatatgctgttattaag

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G104017_T01 (Zea mays), 5'ss of exon 3
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatctgtcttg------attcattc--ttttataatcacatcattctttccctgaatcaa-ttcctttcaaaacag-----------
|| ||||||||||| || ||||| ||||| |||||||| ||||||||||| || || || || || || || ||  | ||||| ||||| || || |||||| ||       || ||  | | |       || || |  |||| || | |  ||  |||||   |  || |   || | ||||  ||            
GAGAAGATGACCCAGATTATGTTCGAGACTTTCAATGTTCCTGCCATGTACGTTGCAATTCAAGCAGTCCTGTCACTCTATGCTAGTGGCCGTACTACTGgtatgacctgctccttccttttagttcagtgttgatccagttttctagtaatctctctctttgtttccattaggctcttatcaacccaccaagtatcttt

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G126010_T01 (Zea mays), 5'ss of exon 3
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtt---tgtatattacc------atctgtcttgattcattcttttataatcacat---cattcttt--ccctgaatcaattccttt-caaaacag------------
|| || ||||| || || |||||||| |||||| |    || || |||||||| || |||||||||||||| || ||||| || ||||| || |||||||||    ||  | |  ||      || | |  ||||     ||   |  |||| |    ||| |      |||||  |  |  ||||   ||| |             
GAGAAAATGACGCAGATTATGTTTGAAACCTTCGAATGCCCAGCAATGTATGTTGCTATCCAGGCTGTTCTTTCGTTGTACGCTAGTGGGCGAACAACTGgtaagatggctgtcgcctcagatatatatagtgatatgcactacaaagatcatacatacatacggcaatcctgacacggtctctttgtcaaatatctctgtgtgcag

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G49240.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatct-----------------gtcttgattcattctttta-taatcacatcattctttccc---tgaatcaattcctttcaaaacag
|| |||||||| || ||||||||||||||||| |||   || || |||||||| ||||| || |||||||| ||  | || ||||||||||| ||||| |||| ||  ||||  |                    || ||| ||  |  ||||| | || |  ||||  |   |    ||||   |||   || |      
GAGAAGATGACTCAGATCATGTTTGAGACCTTTAATTCTCCAGCTATGTATGTTGCCATTCAAGCTGTTCTATCACTTTACGCCAGTGGTCGTACAACCGgttagttcattattaatgtcgagaaaatgaacaaagttttgttttctgtttttaatgattatgtcatattgatcacagtgaaatgattttctttag-----

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatc--tgtcttgattca--ttcttttataatcacatcattctttccctgaatcaattcc--tttcaaaacag
|| |||||||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||| ||||| ||  | |||||||||||||| ||||| |||| ||   | ||  |     ||    |     || | ||||  ||  |    | ||| | | ||    |||   |||   |||||
GAGAAGATGACTCAGATCATGTTTGAGACATTCAATGTCCCTGCCATGTATGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGgttagttcttaactctaaacatccaagtctgagttatattatcttcttacttgtatttacttaaagtcgttctctttttgtaacag

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G18780.1 (Arabidopsis thaliana), 5'ss of exon 2
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatctgtcttgattcattcttttataatcacatcattctttccctgaatcaattcctttcaaaacag
|| |||||||| |||||||||||||||||||| ||    || || |||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| |||| ||| |||     || | |   |  | || || || || |  | |      | |||| |   |||| ||   |||||
GAGAAGATGACTCAAATCATGTTTGAGACCTTTAACTCTCCCGCTATGTATGTCGCCATCCAAGCTGTTCTCTCCTTGTACGCCAGTGGTCGTACAACCGgttagtacattttaggctttttgtttatactcattgatcattatttgaactgagctctgattatcttccatt--gaacag

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 5'ss of exon 4
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatatta--ccatctgtcttga----ttcattcttttataatcacatcattctttccctgaatcaa---ttcctttcaaaacag
||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||| ||  | ||||||||||| || |||||||||| ||||   |  |  | ||  |||     |||||| || | |  |    | | | |  ||     || |   | |   |   |  ||
GAAAAGATGACTCAAATCATGTTTGAGACTTTTAATGTGCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCTCTATATGCCAGTGGGCGTACAACTGgttcgtattaaaatctttttggattggaattttcatttttcttttctgttgttagtgtagcctgagttctaacttgctcctttgactag

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: EDO98923 (Chlamydomonas reinhardtii), 5'ss of exon 5
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatctgtcttgattcattcttttataatcacatcattctttccctgaatcaattcctttcaaaacag
               |||||||| ||||||||||| ||||| |||||||| ||||| |||||||          |      | ||| ||    ||  | |    | ||     ||   | |   |  |        | | | |   ||  |     |   | |  |              
---------------ATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAGgtgagagaggtc----gagacagcggagtaacggccg--cggcatcgcggcacgcggcagcagcccgagccggacagtaa-ggcaggcccatacaacagcggtcggc----------

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 5'ss of exon 4
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatctgtcttgattcattcttttataatcacatcattctttccctgaatcaattcctttcaaaacag-------------------------------------------------------------------------------
|| |||||||| || |||||||| ||||| ||||| ||||| || ||||| |||||||| ||||| || || ||  | ||||||||||| || || || |||  ||  ||        |  |    | | |     ||   |   |  ||       ||    |  |   |  | |   |                                                                               
GAGAAGATGACGCAGATCATGTTCGAGACGTTCAACGTGCCGGCGATGTACGTGGCCATTCAGGCAGTGCTGTCACTATATGCCAGTGGACGAACGACCGgtgagtg-atgggagaaggggtgaggtgaatgcagcatgtgcgt-tggttgcgaaagtggtggaggtgtgtggagaggtggggtgtttgacatgggaaggtttgtgggtcggggtaagaaactgagagcagttgtggtgatgaatgcaatgcaatgcag

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ17401 (Selaginella moellendorffii), 5'ss of exon 2
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgta----tattaccatctgtct-------------tgattcattcttttataatcacatcattctttccctgaatcaattcctttcaaaacag-----------------------------------------------------
|| ||||||||||| |||||||| |||||||||||||| || |||||||| ||||| ||||| || || || ||  | || || ||||| ||||| || ||| || |    | ||| |   ||  |             || || || | | | |  |  | || ||  || |   |  ||      |||||    |                                                     
GAGAAGATGACCCAGATCATGTTCGAGACCTTCAATGTCCCGGCCATGTACGTGGCGATCCAAGCAGTCCTTTCACTCTACGCGAGTGGACGCACTACCGgtatggagtttttttatcccttgcttgttctagacaagatggttgatgcgtgtttcttttcttcgttgcttgcgatagacatgatgcttcaagttggttctacttttgtttttccctctaacacgttgtatgatcgtggtttgtgatcag

upper sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ35077 (Selaginella moellendorffii), 5'ss of exon 2
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatctgtcttgattcattcttttataatcac-atcattctttccctgaatcaattcctttcaaaacag-----------------------------------------------------------------------
|| ||||||||||| |||||||| |||||||||||||| || |||||||| ||||| ||||| || || || ||  | || || ||||| ||||| || ||| || |  ||    | |   ||| ||  |      |  ||            || | |   |   || ||| | | | |                                                                        
GAGAAGATGACCCAGATCATGTTCGAGACCTTCAATGTCCCGGCCATGTACGTGGCAATCCAAGCAGTCCTTTCACTCTACGCGAGTGGACGCACTACCGgtatggagttttttttttcctttgcttgttctagacaagatggttgatgcgtgtttcttttcttcgttgcttgcgatagacatgatgcttcaagttggttctacttttttttcttctctctaacacgttgtatgatcgtggtttgtgatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298194649|gb|HO043121.1|HO043121
EST:     TGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTG                         GTATTGTGTTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATG
genomic: TGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatat ... ttcaaaacagGTATTGTGTTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATG
EST: gi|207828903|gb|GD797626.1|GD797626
EST:     TGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCAAGTGGTCGCACAACTG                         GTATTGTATTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATG
genomic: TGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatat ... ttcaaaacagGTATTGTGTTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatctgtcttgattcattcttttataatcacatcattctttccctgaatcaattcctttcaaaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT