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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTGTGCTTTCCCGGTTTGCCGGCCTTGCTATGAGTATGAAAGGCGTGAAGGGATCCAGGCTTGTCCTCAGTGCAATACCAGATACAAACGTATCAAAGgtgagattggttttgtgcttcctttctttgactctggtatcttgttactgttgtggaagttttcttacagtgttaccgaagaatgaattgcag

Basic information

species Glycine max
transcript GLYMA05G32100.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32100.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G09870.1 (Arabidopsis thaliana), 5'ss of exon 2
GAGTGTGCTTTCCCGGTTTGCCGGCCTTGCTATGAGTATGAAAGGCGTGAAGGGATCCAGGCTTGTCCTCAGTGCAATACCAGATACAAACGTATCAAAGgtgagattggttttgtgcttcctttctttgactctggtatcttgttactgttgtggaagttttcttacagtgttaccgaagaatgaattgcag
|| ||||||||||| || ||  | ||||||||||||||||| || || ||||| | |||  |||||||||||||||| ||  | ||||| || ||||||||| | | |   || ||     |    ||| ||  | || |  | |||    | ||  |    | |   | ||||  |                
GAATGTGCTTTCCCTGTCTGTAGACCTTGCTATGAGTATGAGAGACGAGAAGGAAACCAATCTTGTCCTCAGTGCAAAACTCGTTACAAGCGCATCAAAGgtcacacttactt-gtttcaacaagttttaacctttgtctgatcttatgtatctgacaaaggtttcttattgttttcag--------------

upper sequence: GLYMA05G32100.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G21770.1 (Arabidopsis thaliana), 5'ss of exon 2
GAGTGTGCTTTCCCGGTTTGCCGGCCTTGCTATGAGTATGAAAGGCGTGAAGGGATCCAGGCTTGTCCTCAGTGCAATACCAGATACAAACGTATCAAAGgtgagattggttttgtgcttcctttctttgactctggtatcttgttactgttgtggaagttttcttacagtgttaccgaagaatgaattgcag
|| |||||||||||    ||  | || |||||||||||||||||  | ||||| | ||| |||||||||||||||   ||| ||||||| ||||| |||||  |||    |||| | ||   | | |||  |||    | |||| |         |  | ||  ||    ||||   |               
GAATGTGCTTTCCCTACGTGTAGACCGTGCTATGAGTATGAAAGAAGAGAAGGAAACCAAGCTTGTCCTCAGTGCGGAACCCGATACAAGCGTATTAAAGgcaagagacattttcttctctgtatttttatctc-aaca-cttgctttgagaaaagtggattgatttttatgttgtag---------------