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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGAGTAAACTTCTGCAGCATGCTACAACCATATATCTACACCATACAATAGGTGACTTTGCTGAGGCATTGGCAGCAAAAATGCCTGGAAACCTTAAGgtctgtttttcttgctcctcgaatatttgactgtatgattgcattatgcctcccattcttgaagttccttataatatagttttaaattgtgagtcataac...

Basic information

species Glycine max
transcript GLYMA05G31630.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31630.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0031g01330.t01 (Vitis vinifera), 5'ss of exon 2
GCAGAGTAAACTTCTGCAGCATGCTACAACCATATATCTACACCATACAATAGGTGACTTTGCTGAGGCATTGGCAGCAAAAATGCCTGGAAACCTTAAGgtctgtttttcttgctcctcgaatatttgactgtatgattgcattatgcctcccattcttgaagttccttataatatagtt----ttaaattgtgagtcataac---
||| ||||| || || || ||||||||||||||||| || |||||| ||||||  || ||||| |||||||| ||| ||||||||||||||||||| ||||||  || |      || |     ||  ||  | | | |      || |     |||||   ||||||| |||  |||| |     ||| ||||||  | ||     
GCAAAGTAAGCTACTCCAACATGCTACAACCATATACCTGCACCATGCAATAGCAGATTTTGCAGAGGCATTAGCATCAAAAATGCCTGGAAACCTAAAGgtccattctctaaattcttttttgataggaaagaaaggt----ccattctctagattct---agttcctcatataataggtgcacctaagttgtgatacttatggga