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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTCCCCGCAAATTGAGTCCCTTGAGGTACAAGGCTGTAGCTGGATTAGGGTCCCTGAAACCAAGCATTTGAGGAATCTTTCCATATCCAACAGTGCAGgtagttaactcgttaaagtggtttttgtgtttatatatttgttgttgactgttgtctgtcagacaatcatttgtgcctctacttaagtttctgggattgt...

Basic information

species Glycine max
transcript GLYMA05G30340.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30340.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G10780.1 (Arabidopsis thaliana), 5'ss of exon 2
ACTTCCCCGCAAATTGAGTCCCTTGAGGTACAAGGCTGTAGCTGGATTAGGGTCCCTGAAACCAAGCATTTGAGGAATCTTTCCATATCCAACAGTGCAGgtagttaactcgttaaagtggtttttgtgtttatatatttgttgttgactgttgtctgtcagacaatcatttgtgcctctacttaagtttctgggattgt
||    | |  | | | ||||||||| || ||||| |||||||||||| | ||||||||||||||    || | ||| || ||||| ||||    | | |||| | |     || |  |     |||| ||  |   |   ||     |||  |  | |||          | || ||||  ||   |  | |       
ACGAGTCAGAGATTAGTGTCCCTTGATGTTCAAGGTTGTAGCTGGATTCGTGTCCCTGAAACCAAATTCTTAAAGAACCTATCCATCTCCAGTGTTACTGgtaatgagtc--ttgagttttaacttgt-ttcgttcttccattaccatctgcaga-tctcatttgtcttactttgtctctgattggttaacag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335185|gb|CO979051.1|CO979051
EST:     GGTCCCTGAAACCAAGCATTTGAGGAATCTTTCCATATCCAACAGTGCAG                         GGAGAGTGTATATGGTTGATTTTGGAAATCTTTCAGCTCTGGAGTATCTGT
genomic: GGTCCCTGAAACCAAGCATTTGAGGAATCTTTCCATATCCAACAGTGCAGgtagttaact ... ttgctttcagGGAGAGTGTATATGGTTGATTTTGGAAATCTTTCAGCTCTGGAGTATCTGT