Sequence
atgc intronic sequence ATGC exonic sequenceCAATGAGGACAGGGCTCTCTTCACCATCGTCGTGTCAGGGACCGATAAGGTGCTGCGCCAAGTCATGGAGCAGCTTCAGAAACTCGTCAATGTCTTAAAGgttcaccgtctttttcgtgacataccaattccgtgtaactggcgtttttattgtgtgtttttgtgagatgtcatttggagaaagtgtttgatagtgaaattagtgagagattgaatctgaaggaaacgtgttgctaatgctggctag
Basic information
species | Glycine max |
transcript | GLYMA05G30130.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G30130.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G007647_T01 (Zea mays), 5'ss of exon 2
CAATGAGGACAGGGCTCTCTTCACCATCGTCGTGTCAGGGACCGATAAGGTGCTGCGCCAAGTCATGGAGCAGCTTCAGAAACTCGTCAATGTCTTAAAGgttcaccgtctttttcgtgacatacc--aattccgtgtaactggcgtttttattgtgtgtttttgtgagatgtcatttggagaaagtgtttgatagtgaaattagtgagagattgaatctgaaggaaacgtgttgctaatgctggctag
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CAACAAGGACAAGGCCCTCTTCACCATTGTCGTCTCCGGGACCGACATGGTGCTCAACCAAGTCATTGAGCAGCTCAATAAGCTCGTCAACGTTCATAGTgtgagtacgccttctcaaaatttggccgagtcacgcgaatccgtacttcattttgatgcccccggtgacgattcactagtacagtgagatt--ttgttccat-----------------------------------------------
upper sequence: GLYMA05G30130.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G407044_T02 (Zea mays), 5'ss of exon 2
CAATGAGGACAGGGCTCTCTTCACCATCGTCGTGTCAGGGACCGATAAGGTGCTGCGCCAAGTCATGGAGCAGCTTCAGAAACTCGTCAATGTCTTAAAGgttcaccgtctttttcgtgacataccaattccgtgtaactggcgtttttattgtg-tgtttttgtgagatgtcatttggagaaagtgtttgatagtgaaattagtgagagattgaatctgaaggaaacgtgttgctaatgctggctag
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CAACAAGGACAAGGCCCTCTTCACCATTGTCGTCTCCGGGACCGACAGGGTGCTCAACCAAGTCATCGAGCAGCTCAATAAGCTTGTCAACGTCCTGAGTgtgagtccgccttctcaaaatttagcgaagccacgcgaatccatacttgattttgatgtccccggttggag-caccgggtgacaat--tcagtagtacagtgg---------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9258620|gb|BE346767.1|BE346767EST: TGCTGCGCCAAGTCATGGAGCAGCTTCAGAAACTCGTCAATGTCTTAAAG GTAGAGGATCTTTCGAGGGAACCACAGGTGGAACGTGAACTGATGCTCATA
genomic: TGCTGCGCCAAGTCATGGAGCAGCTTCAGAAACTCGTCAATGTCTTAAAGgttcaccgtc ... tgctggctagGTAGAGGATCTTTCGAGGGAACCACAGGTGGAACGTGAACTGATGCTCATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATGAGGACAGGGCTCTCTTCACCATCGTCGTGTCAGGGACCGATAAGGTGCTGCGCCAAGTCATGGAGCAGCTTCAGAAACTCGTCAATGTCTTAAAGgttcaccgtctttttcgtgacataccaattccgtgtaactggcgtttttattgtgtgtttttgtgagatgtcatttggagaaagtgtttgatagtgaaattagtgagagattgaatctgaaggaaacgtgttgctaatgctggctag
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT