1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TAGTGGTTATGAGAGTTCAGATGTTGTGGTCATCGATGAGGTCGAAATGCAGAGGCACCACCAGCTGGAAAAGCTGTACAGGGCCACACGTGCAGGGAAGgtatgcaatttctctttgtgtttagattaattgttagctttgctatgtttgagcaacaaggaatttcctacttcatattaactcaaaatagaatgttata...
species | Glycine max |
transcript | GLYMA05G29700.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGAGGCACCACCAGCTGGAAAAGCTGTACAGGGCCACACGTGCAGGGAAG GACTTCCAGAAAGAAATTGCTAAAGTAGCAGAAACATTTACAGCTATAGGTEST: gi|209698264|gb|BW667553.1|BW667553
genomic: AGAGGCACCACCAGCTGGAAAAGCTGTACAGGGCCACACGTGCAGGGAAGgtatgcaatt ... tctgatccagGACTTCCAGAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATAGGT
EST: AGAGGCACCACCAGCTGGAAAAGCTGTACAGGGCCACACGTGCAGGGAAG GACTTCCAGAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATAGGTEST: gi|213618487|gb|DB963388.1|DB963388
genomic: AGAGGCACCACCAGCTGGAAAAGCTGTACAGGGCCACACGTGCAGGGAAGgtatgcaatt ... tctgatccagGACTTCCAGAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATAGGT
EST: AGAGGCACCACCAGCTGGAAAAGCTGTACAGGGCCACACGTGCAGGGAAG GACTTCCAGAAAGAAATTGTTAAAGCAGCEST: gi|151413137|gb|EV282945.1|EV282945
genomic: AGAGGCACCACCAGCTGGAAAAGCTGTACAGGGCCACACGTGCAGGGAAGgtatgcaatt ... tctgatccagGACTTCCAGAAAGAAATTGTTAAAGCAGC
EST: AGAGGCACCACCAGCTGGAAAAGCTGTACAGGGCCACACGTACAGGGAAG GACTTCCGGAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATAGGTEST: gi|208181147|gb|GD980186.1|GD980186
genomic: AGAGGCACCACCAGCTGGAAAAGCTGTACAGGGCCACACGTGCAGGGAAGgtatgcaatt ... tctgatccagGACTTCCAGAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATAGGT
EST: CACGTGCAGGGAAG GACTTCCAGAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATAGGT
genomic: CACGTGCAGGGAAGgtatgcaatt ... tctgatccagGACTTCCAGAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGTGGTTATGAGAGTTCAGATGTTGTGGTCATCGATGAGGTCGAAATGCAGAGGCACCACCAGCTGGAAAAGCTGTACAGGGCCACACGTGCAGGGAAGgtatgcaatttctctttgtgtttagattaattgttagctttgctatgtttgagcaacaaggaatttcctacttcatattaactcaaaatagaatgttata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG