1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGTTACGATAGGGAACTCGACACTTTTCGCCATTATTTCCTTGTTGGGGCAAGCTTTGCTTTGGCACTCATCTTGCATGAAAAGTTCACTGTTCAAGAGgtcccttgcttttttaactcactcccctttttgcacttcttattctctgctttctagttagcttggttttagtttctaatgattcatatcttgaatcata...
species | Glycine max |
transcript | GLYMA05G29410.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGCACTCATCTTGCATGAAAAGTTCACTGTTCAAGAG ATTTTCTGGGCATTTTCAATATACTTGGAGGCAGTTGCAATATTACCCCAGEST: gi|192294404|gb|FG987333.1|FG987333
genomic: GGCACTCATCTTGCATGAAAAGTTCACTGTTCAAGAGgtcccttgct ... tctgttacagATTTTCTGGGCATTTTCAATATACTTGGAGGCAGTTGCAATATTACCCCAG
EST: CAAGCTTTGCTTTGGCACTCATCTTGCATGAAAAGTTCACTGTTCAAGAG ATTTTCTGGGCATTTTCAATATACTTGGAGGCAGTTGCAATATTACCCCAGEST: gi|16343489|gb|BI969084.1|BI969084
genomic: CAAGCTTTGCTTTGGCACTCATCTTGCATGAAAAGTTCACTGTTCAAGAGgtcccttgct ... tctgttacagATTTTCTGGGCATTTTCAATATACTTGGAGGCAGTTGCAATATTACCCCAG
EST: CAAGCTTTGCTTTGGCACTCATCTTGCATGAAAAGTTCACTGTTCAAGAG ATTTTCTGGGCATTTTCAATATACTTGGAGGCAGTTGCAATATTACCCCAGEST: gi|22933449|gb|BU550588.1|BU550588
genomic: CAAGCTTTGCTTTGGCACTCATCTTGCATGAAAAGTTCACTGTTCAAGAGgtcccttgct ... tctgttacagATTTTCTGGGCATTTTCAATATACTTGGAGGCAGTTGCAATATTACCCCAG
EST: CAAGCTTTGCTTTGGCACTCATCTTGCATGAAAAGTTCACTGTTCAAGAG ATTTTCTGGGCATTTTCAATATACTTGGAGGCAGTTGCAATATTACCCCAGEST: gi|6726058|gb|AW310457.1|AW310457
genomic: CAAGCTTTGCTTTGGCACTCATCTTGCATGAAAAGTTCACTGTTCAAGAGgtcccttgct ... tctgttacagATTTTCTGGGCATTTTCAATATACTTGGAGGCAGTTGCAATATTACCCCAG
EST: CAAGCTGTGCTATGGCACTCATCTTGCATGAAAAGTTCACTGTTCAAGAG ATCTTCTGGGCATTTTCAATATACTTGGAGGCAGTTGCAATATTACCCCAGEST: gi|6502251|gb|AW203624.1|AW203624
genomic: CAAGCTTTGCTTTGGCACTCATCTTGCATGAAAAGTTCACTGTTCAAGAGgtcccttgct ... tctgttacagATTTTCTGGGCATTTTCAATATACTTGGAGGCAGTTGCAATATTACCCCAG
EST: CAAGCTTTGCTTTGGCACTCATCTTGCATGAAAAGTACACTGTTCAAGAG ATTATCTGGGCATTTTCAATATACTTGGAGGCAGTTGCAATATTACCCCAGEST: gi|192300473|gb|FG991485.1|FG991485
genomic: CAAGCTTTGCTTTGGCACTCATCTTGCATGAAAAGTTCACTGTTCAAGAGgtcccttgct ... tctgttacagATTTTCTGGGCATTTTCAATATACTTGGAGGCAGTTGCAATATTACCCCAG
EST: CAAGCTTTGCTTTGGCACTCATCTTGCATGAAAAGTTCACTGTTCAAGAG ATTTTCTGGGCATTTTCAATATACTTGGAGACAGTTGCAATATTACCCCAG
genomic: CAAGCTTTGCTTTGGCACTCATCTTGCATGAAAAGTTCACTGTTCAAGAGgtcccttgct ... tctgttacagATTTTCTGGGCATTTTCAATATACTTGGAGGCAGTTGCAATATTACCCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTTACGATAGGGAACTCGACACTTTTCGCCATTATTTCCTTGTTGGGGCAAGCTTTGCTTTGGCACTCATCTTGCATGAAAAGTTCACTGTTCAAGAGgtcccttgcttttttaactcactcccctttttgcacttcttattctctgctttctagttagcttggttttagtttctaatgattcatatcttgaatcata
- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcccct