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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAGTAACAATATCAGCTGAAGCTGGCAGACAAAATTGGGATTTTGGAAGATTTGTAAAAACACTGTTCTTCTTCAATGGGTTCCCATCTCCTGCTAAGgtaacactttattcaattttcagttagtataactagagagtaataggaagaaaagagagaggttggtgtggaatatggatcaactaatgagtattctttgtttctgaattgtgaag

Basic information

species Glycine max
transcript GLYMA05G29330.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258268|gb|BE346415.1|BE346415
EST:     GATTTGTAAAAACACTGTTCTTCTTCAATGGGTTCCCATCTCCTGCTAAG                         TTCTTTGATTTTCTAGTTGAGAAACTATCTGATCCTTCCCCAAGTGAAGTG
genomic: GATTTGTAAAAACACTGTTCTTCTTCAATGGGTTCCCATCTCCTGCTAAGgtaacacttt ... aattgtgaagTTCTTTGATTTTCTAGTTGAGAAACTATCTGATCCTTCCCCAAGTGAAGTG
EST: gi|20075778|gb|BQ094561.1|BQ094561
EST:     GATTTGTAAAAACACTGTTCTTCTTCAATGGGTTCCCATCTCCTGCTAAG                         TTCTTTGATTTTCTAGTTGAGAAACTATCTGATCCTTCCCCAAGTGAAGTG
genomic: GATTTGTAAAAACACTGTTCTTCTTCAATGGGTTCCCATCTCCTGCTAAGgtaacacttt ... aattgtgaagTTCTTTGATTTTCTAGTTGAGAAACTATCTGATCCTTCCCCAAGTGAAGTG
EST: gi|208192048|gb|GD990610.1|GD990610
EST:     GATTTGTAAAAACACTGTTCTTCTTCAATGGGTTCCCATCTCCTGCTAAG                         TTCTTTGATTTTCTAGTTGAGAAACTATCTGATCCTTCCCCAAGTGAAGTG
genomic: GATTTGTAAAAACACTGTTCTTCTTCAATGGGTTCCCATCTCCTGCTAAGgtaacacttt ... aattgtgaagTTCTTTGATTTTCTAGTTGAGAAACTATCTGATCCTTCCCCAAGTGAAGTG