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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGCACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAGgtatcactccttcttcgtttcttttggcatcaacaaaataatcacctcttctgttctgttctgttctgttgtttttttcttcttcgctatgcttccag

Basic information

species Glycine max
transcript GLYMA05G28650.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G28650.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G112015_T01 (Zea mays), 5'ss of exon 2
GCAAGCACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAGgtatcactccttcttcgtttcttttggcatcaacaaaataatcacctcttctgttctgttc---tgttctgttgtttttttcttcttc-gctatgcttccag
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GCCAATACGCTGCGGTTGTACCTCACCTGCATCCGGAACACTCTGGAGGCGGCGATGTGCCTCCAGgtatt--ctcttctgcttctgctcgaggctcctcctcctgctgctgttcccagttcaccacgagcgtaacgtggatggtttgtccttttgttctggtaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298169680|gb|HO021040.1|HO021040
EST:     TATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAG                         AACTTTCCCTGCCAAGAAGTCGAAAGGCATAACAAGCCCGATGTTGAACTC
genomic: TATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAGgtatcactcc ... atgcttccagAACTTTCCCTGCCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTC