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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttcattagtaatcacttttttgtgtttgtagaatcgacacttattctctaaacgacgacgtttataatctctctcaatctgagcatttttttaatcgtctttcatatgcag

Basic information

species Glycine max
transcript GLYMA05G27940.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298166298|gb|HO009269.1|HO009269
EST:     GTGAAGTACTCAAGGGAGCCTGATAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|18719541|gb|BM523201.1|BM523201
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|7686619|gb|AW757276.1|AW757276
EST:     GGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|6566144|gb|AW233783.1|AW233783
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|6952016|gb|AW424084.1|AW424084
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|254324956|gb|GR834381.1|GR834381
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|16996874|gb|BM086246.1|BM086246
EST:     GCCGCCATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GCCGCCATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|5058385|gb|AI736917.1|AI736917
EST:     AGCCGCCATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: AGCCGCCATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|13788824|gb|BG651415.1|BG651415
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|19271182|gb|BM887438.1|BM887438
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|5510348|gb|AI856673.1|AI856673
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|18848858|gb|BM567969.1|BM567969
EST:     CTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|15813051|gb|BI785326.1|BI785326
EST:     TGGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: TGGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|209696899|gb|BW660464.1|BW660464
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|18730282|gb|BM525790.1|BM525790
EST:     CGCCATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: CGCCATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|6913074|gb|AW394604.1|AW394604
EST:     ATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: ATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|12496577|gb|BG047134.1|BG047134
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|12496627|gb|BG047159.1|BG047159
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|15200901|gb|BI424589.1|BI424589
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|14990091|gb|BI315764.1|BI315764
EST:     GGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|298176448|gb|HO026683.1|HO026683
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|26269293|gb|CA820356.1|CA820356
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|298178897|gb|HO024632.1|HO024632
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|6455153|gb|AW185836.1|AW185836
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTTATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|298172000|gb|HO021592.1|HO021592
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGCTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|7145918|gb|AW507840.1|AW507840
EST:     GGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGGTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|14990125|gb|BI315798.1|BI315798
EST:     GGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|298184857|gb|HO030070.1|HO030070
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAATCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|7042501|gb|AW472395.1|AW472395
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|24136303|gb|BU926813.1|BU926813
EST:     TGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: TGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|22930393|gb|BU547532.1|BU547532
EST:     GCCGCCATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GCCGCCATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|16347198|gb|BI972793.1|BI972793
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|213596920|gb|DB964127.1|DB964127
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|13562772|gb|BG550992.1|BG550992
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|27426431|gb|CA937951.1|CA937951
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|10709618|gb|BF009342.1|BF009342
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|5666572|gb|AI930608.1|AI930608
EST:     ACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: ACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|5126866|gb|AI748602.1|AI748602
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|13312171|gb|BG405831.1|BG405831
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|19269566|gb|BM885822.1|BM885822
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG