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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAAGGTGAGCACAAGGAGAGTTTGTATTGGGGAACTTATCGTCCTCACGTGTATCTCGGAATTCGCGCCAGgtatgttaccgtttctgaagcacaattcatgtgtatttattttggaatatatatatagggagcatatcaggtgagaggagtgttttattatgagaggtga...

Basic information

species Glycine max
transcript GLYMA05G27900.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G27900.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 2
TTTGAAGGTGAGCACAAGGAGAGTTTGTATTGGGGAACTTATCGTCCTCACGTGTATCTCGGAATTCGCGCCAGgtatgttaccgtttctgaagcacaattcatgtgtatttattttggaatatatatatagggagcatatcaggtgagaggag---tgttttattatgagaggtga
||  |||| |||||||||||||| |||||||||||||| ||||| ||||| || ||||| |||||||| |||||||||    |||  |     |   ||||||         | ||| || | ||  |       | |||||   |      |    |||| |  ||  | || |  
TTCCAAGGCGAGCACAAGGAGAGCTTGTATTGGGGAACATATCGCCCTCAGGTTTATCTTGGAATTCGTGCCAGgtatcactccgcctgctt-gtttaattcacaaaacgccaattttgattttagtttagttatgtatatctatttttcttatctttgttattctacaacagtt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26047913|gb|CA784554.1|CA784554
EST:     TTTTATTGGGGAACTTATCGTCCTCACGTGTATCTCGGAATTCGCGCCAG                         GACTCCAAAATCTTTGATGGCTGGATTAATGTGGATTGGTGTGAAGGATGG
genomic: TTGTATTGGGGAACTTATCGTCCTCACGTGTATCTCGGAATTCGCGCCAGgtatgttacc ... tctatttcagGACTCCAAAATCTTTGATGGCTGGATTAATGTGGATTGGTGTGAAGGATGG
EST: gi|254323178|gb|GR835786.1|GR835786
EST:     TTGTATTGGGGAACTTATCGTCCTCACGTGTATCTCGGAATTCGCGCCAG                         GACTCCAAAATCTTTGATGGCTGGATTAATGTGGATTGGTGTGAAGGATGG
genomic: TTGTATTGGGGAACTTATCGTCCTCACGTGTATCTCGGAATTCGCGCCAGgtatgttacc ... tctatttcagGACTCCAAAATCTTTGATGGCTGGATTAATGTGGATTGGTGTGAAGGATGG