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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAAGGTGAGCACAAAGAGAGTTTGTATTGGGGAACTTATCGTCCTCAGGTCTATCTTGGAATTCGTGCCAGgtattctactttgagtattttctttaccaataataatatgaaaacactttcttattttaaacatttctttgacatttttcatttttttatttatattttc...

Basic information

species Glycine max
transcript GLYMA05G27890.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G27890.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 2
TTTGAAGGTGAGCACAAAGAGAGTTTGTATTGGGGAACTTATCGTCCTCAGGTCTATCTTGGAATTCGTGCCAGgtattctactttgagtattttctttaccaataataatatgaaaacactttcttattttaaacatttct-ttgacatttttcatttttttatttatattttc---
||  |||| |||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||   |||  |  |  ||  || |   | || ||    ||      || ||| ||||   || | | |  |  ||| | || ||| |  || ||        
TTCCAAGGCGAGCACAAGGAGAGCTTGTATTGGGGAACATATCGCCCTCAGGTTTATCTTGGAATTCGTGCCAGgtatc--actccgcctgcttgtttaattcacaa-aacgccaattttgatt-ttagtttagttatgtatatctatttttcttatctttgttattctacaacagtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213605478|gb|DB964617.1|DB964617
EST:     TTGTATTGTGGAACTTATCGTCCTCAGGTCTATCTTGGAATTCGTGCCAG                         GACTCCAAAATCTTTGATAGCTGGATTAATGTGGATTGTTGTGAAGGACGG
genomic: TTGTATTGGGGAACTTATCGTCCTCAGGTCTATCTTGGAATTCGTGCCAGgtattctact ... tgtatttcagGACTCCAAAATCTTTGATAGCTGGATTAATGTGGATTGTTGTGAAGGACGG
EST: gi|213587163|gb|DB959542.1|DB959542
EST:     TTGTATTGGGGAACTTATCGTCCTCAGGTCTATCTTGGAATTCGTGCCAG                         GACTCCAAAATCTTTGATAGCTGGATTAATGTGGATTGTTGTGAAGGACGG
genomic: TTGTATTGGGGAACTTATCGTCCTCAGGTCTATCTTGGAATTCGTGCCAGgtattctact ... tgtatttcagGACTCCAAAATCTTTGATAGCTGGATTAATGTGGATTGTTGTGAAGGACGG