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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatcattctaatctttcttttctttttttatttgtaattttaaaaaaattgaatctatttgtatttgtttggtgattgacatttttgtggatgctctttctggttttgcag

Basic information

species Glycine max
transcript GLYMA05G26630.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G26630.2 (Glycine max), 5'ss of exon 2
lower sequence: AT1G14530.1 (Arabidopsis thaliana), 5'ss of exon 2
GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGG----GGgtttgtatcattctaatctttcttttctttttttatttgtaattttaaaaaaattgaatctatttgtatttgtttggtgattgacatttttgtggatgctctttctggttttgcag
 ||||||| ||  |||||||||||||||| || |||||||| ||||| ||||||||||||||||| |||||||||||||| || || ||    |||||||| |   |||  |   | |||  |||| || | ||||  |||     | | |    | ||  | |||||                                           
ATTCAATTGGTAAGAATACAATTGAGAGTTCCAGAATATGGCTGGACGACGCAGAAGGTCTTTCATTTTCTCAATTTCATGGTTAACGGAGgtgggtttgtttgtctcttgttagtttttgattttgttttgtgtatcttttgttgattggctcgtcttcttctttgtag-----------------------------------------

upper sequence: GLYMA05G26630.2 (Glycine max), 5'ss of exon 2
lower sequence: AT2G02180.1 (Arabidopsis thaliana), 5'ss of exon 2
GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatcattctaatctttcttttctttttttatttgtaatt--ttaaaaaaattgaatctatttgtatttgtttggtgattgacatttttgtggatgctctttctggttttgcag
 ||||| | ||| |||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||| |||| ||||| |||| || |   |      |||  |||| | | ||  |  | |||  || |   | |||  ||   |||||| || | |                                        
ATTCAACTTGTGAGAATACAATTGAGAGTTCCTGAATATGGTTGGACGACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTGTTAATGGAGgttagtgttgctgcggattttgatttcgtgtgttcatgttgattgattgattgatttggctcatcttgtatctggtag----------------------------------------

upper sequence: GLYMA05G26630.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ23006 (Selaginella moellendorffii), 5'ss of exon 2
GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatcattctaatctttcttttctttttttatttgtaattttaaaaaaattgaatctatttgtatttgtttggtgattgacatttttgtggatgctctttctggttttgcag
 | ||| |  | || ||  |  |  | || || || ||||| |||||||||||||||||||| || || || |||||| |||| ||||| |||  |  || | |  |||||     | |   || || | |   |||   |                                                                  
ATACAACTCATCCGGATCGAGATTCGCGTCCCCGAGTATGGCTGGACCACGCAGAAGGTCTTCCATTTGCTGAATTTCCTTGTAAATGGAGgtgagattcttcc--atcttagaactttggattgatctcttcgtttgctag-----------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213600472|gb|DB970324.1|DB970324
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG                         TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
EST: gi|151402287|gb|EV272100.1|EV272100
EST:     CACTTTCTCAATTTCATTGTGAATGGGG                         TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: CACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
EST: gi|254327807|gb|GR834772.1|GR834772
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG                         TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
EST: gi|213593691|gb|DB971713.1|DB971713
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG                         TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
EST: gi|209706563|gb|BW676111.1|BW676111
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG                         TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
EST: gi|192324953|gb|FK015404.1|FK015404
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG                         TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
EST: gi|5606771|gb|AI900869.1|AI900869
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG                         TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
EST: gi|26047656|gb|CA784373.1|CA784373
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG                         TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
EST: gi|213602225|gb|DB958485.1|DB958485
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG                         TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
EST: gi|151408492|gb|EV278300.1|EV278300
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG                         TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG