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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGTTTGAGGGTAACACTGGTATCATTGTCGTTGCAGCAACTAACAGGGCTGACATTCTTGACTCTGCCTTATTGAGACCGGGTCGGTTTGATAGACAGgtatgattatattatgaaatgcctcatgcttttgtgaatgagtaaattactaaacatcattgctttttcag

Basic information

species Glycine max
transcript GLYMA05G26230.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G26230.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os06g45820.1 (Oryza sativa), 5'ss of exon 2
TGGGTTTGAGGGTAACACTGGTATCATTGTCGTTGCAGCAACTAACAGGGCTGACATTCTTGACTCTGCCTTATTGAGACCGGGTCGGTTTGATAGACAGgtatgattatattatgaaatgcctcatgcttttgtgaatgagtaaattactaaacatcattgctttttcag-----------------------------
||| |||||||| |||||||| ||||||||  |||| || || ||||||||||| || || || ||||| ||| | ||||| || || ||||| ||||||||  | || |||      |    || |     ||||||    |    || |  |  |  |  ||  ||||                              
TGGTTTTGAGGGGAACACTGGAATCATTGTTATTGCTGCCACCAACAGGGCTGATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGACAGACAGgttagtttttatccactgaacattcttttggatgtgaacatctgttgtattctagtttttaactcattcaattgtgacacaattaagtaaaaatgtttca

upper sequence: GLYMA05G26230.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G30950.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGGTTTGAGGGTAACACTGGTATCATTGTCGTTGCAGCAACTAACAGGGCTGACATTCTTGACTCTGCCTTATTGAGACCGGGTCGGTTTGATAGACAGgtatgattatattatgaaatgcctcatgcttttgtgaatgagtaa-attactaaacatcattgctttttcag--------------
||| ||||| |||||||||||| | || || ||||| ||||| || || || ||||||||||||||||| || ||||| || || ||||||||  | ||||||  ||   ||||| | |          |||||| |    |||  | | ||| |  |  | ||||  | |               
TGGTTTTGAAGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAATAGAGCAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAGgtactatctgattattacacattgatatgttttgtaatcctgtactactcctagagcttgt-gcttacttataatttctggtgcag

upper sequence: GLYMA05G26230.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G06430.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGGTTTGAGGGTAACACTGGTATCATTGTCGTTGCAGCAACTAACAGGGCTGACATTCTTGACTCTGCCTTATTGAGACCGGGTCGGTTTGATAGACAGgtatgattatattatgaaatgcctcatgcttttgtgaatgagtaaattactaaacatcattgctttttcag----------------------
||| |||||||||||||||||| | || || ||||| ||||| ||||| || |||||||||||||| || ||  | ||||| || || |||||  | |||||||   ||| | |  |||||||   ||  | ||    |   |  ||  ||    ||   || ||  | |                       
TGGTTTTGAGGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAACAGAGCAGACATTCTTGACTCCGCTTTGCTAAGACCAGGGCGTTTTGACCGGCAGgtata--tatttgactaaatgccgtgtgtctgtgactttccattgatc-ctctttattgctggttgcttattgtgtgttgttgtttgatgcag

upper sequence: GLYMA05G26230.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 2
TGGGTTTGAGGGTAACACTGGTATCATTGTCGTTGCAGCAACTAACAGGGCTGACATTCTTGACTCTGCCTTATTGAGACCGGGTCGGTTTGATAGACAGgtatg-------attatattatgaaatgcctcatgcttttgtgaatgagtaaattactaaacatcattgcttttt--cag
||| ||||| || ||||||||||| |||||  ||||||| ||||||||||| |||||||||||||||||||||||||| || || || ||||| ||||||||| |       | |||||| |    ||||| ||  |||  |  | | |  || |||| | | | |  |||||    |||
TGGTTTTGAAGGAAACACTGGTATAATTGTTATTGCAGCCACTAACAGGGCAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatagagaatatattgttttttgccttatcttttattataagtgggaaatactta-cgttaaagctttggagcag